Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHA71_RS34585 Genome accession   NZ_CP107916
Coordinates   7539154..7541082 (-) Length   642 a.a.
NCBI ID   WP_328440788.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00444     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7534154..7546082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA71_RS34570 (OHA71_34560) - 7534314..7535579 (+) 1266 WP_328364881.1 FAD-dependent oxidoreductase -
  OHA71_RS34575 (OHA71_34565) dnaG 7535628..7537526 (+) 1899 WP_328440787.1 DNA primase -
  OHA71_RS34580 (OHA71_34570) - 7537692..7538966 (+) 1275 WP_328364886.1 RNA polymerase sigma factor -
  OHA71_RS34585 (OHA71_34575) rcrQ 7539154..7541082 (-) 1929 WP_328440788.1 ABC transporter ATP-binding protein Regulator
  OHA71_RS34590 (OHA71_34580) rcrP 7541082..7542815 (-) 1734 WP_328364892.1 ABC transporter ATP-binding protein Regulator
  OHA71_RS34595 (OHA71_34585) - 7543024..7544478 (-) 1455 WP_328364895.1 FGGY family carbohydrate kinase -
  OHA71_RS34600 (OHA71_34590) - 7544630..7544929 (-) 300 WP_210574173.1 YtxH domain-containing protein -
  OHA71_RS34620 (OHA71_34610) - 7545848..7546021 (+) 174 WP_328440789.1 prevent-host-death family protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69725.06 Da        Isoelectric Point: 5.6977

>NTDB_id=649091 OHA71_RS34585 WP_328440788.1 7539154..7541082(-) (rcrQ) [Streptomyces sp. NBC_00444]
MAGPAGRMMAGTGPEHRSMDFKGSGKRLVAQFRPERLTICALLLCVVVSVGLSVVGPKILGHATDLVFAGIVGRQFEAGS
TKEQVLDAMRERGDGSVADMLRSTDFTPGQGVDFEAVGSVLLLALGVFVVAGLLMLVATRLVNRSVNRTMYRMREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSVLTIIGVLAMMFWVSWILALVALVTVPLSFVVATRVGK
RSQPHFVQQWRSTGKLNAHVEEMYTGHALVKVFGRQDESARQFAEQNDALYEAGFKAQFNSGIMQPLMMFVSNINYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASSERIFEVLDAEEQEADPMPGERPEELRGRVALE
HVSFRYDPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIARMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASRDVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGAIVEQGAHGELLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=649091 OHA71_RS34585 WP_328440788.1 7539154..7541082(-) (rcrQ) [Streptomyces sp. NBC_00444]
ATGGCCGGGCCTGCAGGGCGGATGATGGCCGGGACGGGGCCGGAGCACCGCTCGATGGACTTCAAGGGGTCGGGCAAACG
GCTCGTCGCCCAGTTCAGACCCGAACGGCTCACGATCTGCGCACTGCTGCTGTGCGTGGTGGTGAGCGTGGGCCTGTCGG
TGGTCGGGCCGAAGATCCTCGGTCATGCGACCGACCTGGTCTTCGCGGGCATCGTCGGGCGGCAGTTCGAGGCCGGGTCC
ACCAAGGAGCAGGTGCTCGATGCGATGCGGGAGCGGGGTGACGGCTCGGTCGCCGACATGCTCCGCAGCACTGACTTCAC
GCCGGGTCAGGGCGTCGACTTCGAGGCGGTCGGCTCCGTACTGCTGCTCGCGCTGGGCGTGTTCGTGGTGGCGGGGCTGC
TGATGCTGGTGGCGACGCGGCTGGTGAACCGTTCCGTGAACCGGACGATGTACCGGATGCGGGAGGACGTACAGACGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTGCTGTCCCGTGCCACCAACGACATCGACAA
CATCGGGCAGACGTTGCAGCAGTCGATGGGGCAGCTCATCAACTCCGTGCTCACCATCATCGGTGTGCTCGCCATGATGT
TCTGGGTGTCCTGGATCCTGGCGCTGGTGGCGCTGGTGACCGTGCCGCTGTCGTTCGTCGTCGCCACCCGGGTCGGGAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGCTCCACCGGCAAGCTCAACGCGCACGTCGAGGAGATGTACACCGGGCA
CGCGCTGGTGAAGGTGTTCGGGCGGCAGGACGAGTCGGCGCGGCAGTTCGCCGAGCAGAACGACGCGTTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACATCAACTACGTGCTGGTCGCC
GTGGTCGGTGGCCTGCGGGTCGCGTCCGGCTCGCTGTCCATCGGTGACGTGCAGGCCTTCATCCAGTACTCCCGGCAGTT
CTCCATGCCGCTCACGCAGGTCGCGTCGATGGCGAACCTCGTGCAGTCCGGGGTCGCCTCGTCCGAGCGGATCTTCGAAG
TCCTCGACGCCGAGGAGCAGGAGGCCGATCCGATGCCGGGCGAGCGGCCGGAGGAGCTGCGCGGGCGGGTGGCGCTGGAG
CATGTGTCCTTCCGGTACGACCCCGAGAAGCCGCTCATCGAGGATCTGTCGCTGAAGGTCGAGCCCGGGCACACGGTCGC
GATCGTCGGGCCGACCGGTGCGGGCAAGACCACGCTGGTGAACCTGCTGATGCGGTTCTACGAGGTCTCCGGCGGGCGGA
TCACCCTCGACGGTGTCGACATCGCGCGGATGTCCCGGGACGAACTGCGTGCCGGGATCGGCATGGTGCTCCAGGACACC
TGGTTGTTCGGCGGGACCATCGCCGAGAACATCGCGTACGGGGCGTCCAGGGACGTCACCCGGGGCGAGATCGAGGAGGC
GGCGCGGGCTGCGCACGCGGACCGGTTCGTCCGGACGCTGCCGGACGGGTACGACACCGTGATCGACGACGAGGGGACCG
GGGTCAGCGCGGGTGAGAAGCAGCTGATCACCATCGCGCGGGCGTTTCTGTCCGATCCGGTGATCCTGGTGCTGGACGAG
GCGACGAGTTCTGTGGACACGCGGACCGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTGGCGCACGGTCGTACGTCGTT
CGTCATCGCGCATCGGCTGTCGACGATTCGGGATGCCGACACGATTCTGGTGATGGAGAACGGGGCGATCGTGGAACAGG
GGGCGCACGGGGAGTTGCTGGCGGCCGACGGGGCTTATGCGCGGTTGTACAAGGCGCAGTTCGCGCAGGCGGTGGCTGAG
GTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(40-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.615

96.262

0.391