Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   L3X25_RS04715 Genome accession   NZ_CP091310
Coordinates   910651..911619 (+) Length   322 a.a.
NCBI ID   WP_002799191.1    Uniprot ID   A0A0Q2L7K2
Organism   Campylobacter coli strain M8     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 905651..916619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3X25_RS04690 (L3X25_04690) - 906507..907232 (-) 726 WP_002834214.1 phosphatidate cytidylyltransferase -
  L3X25_RS04695 (L3X25_04695) - 907241..907579 (-) 339 WP_175056166.1 hypothetical protein -
  L3X25_RS04700 (L3X25_04700) - 907581..908888 (-) 1308 WP_072232458.1 NFACT family protein -
  L3X25_RS04705 (L3X25_04705) - 908951..909526 (+) 576 WP_224308062.1 molybdenum cofactor guanylyltransferase -
  L3X25_RS04710 (L3X25_04710) - 909523..910518 (+) 996 WP_224308064.1 phospholipase A -
  L3X25_RS04715 (L3X25_04715) ceuB 910651..911619 (+) 969 WP_002799191.1 ABC transporter permease Machinery gene
  L3X25_RS04720 (L3X25_04720) - 911612..912550 (+) 939 WP_002777770.1 iron chelate uptake ABC transporter family permease subunit -
  L3X25_RS04725 (L3X25_04725) - 912547..913302 (+) 756 WP_002777772.1 ATP-binding cassette domain-containing protein -
  L3X25_RS04730 (L3X25_04730) - 913317..914306 (+) 990 WP_002777774.1 siderophore ABC transporter substrate-binding protein -
  L3X25_RS04735 (L3X25_04735) - 914472..915104 (+) 633 WP_002777778.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35551.38 Da        Isoelectric Point: 9.5069

>NTDB_id=649080 L3X25_RS04715 WP_002799191.1 910651..911619(+) (ceuB) [Campylobacter coli strain M8]
MLFKHLFSLNILLILLVVFGIISLFIGVIRINLDDIFSLSTTQLEIILLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIINAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIAGMGEDLALNLGVSYNTILFLGLIIVSIITSVV
IVSIGVIPFLGLIIPNLVAIYRGDNLKKNLIYIALCGALFLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKT
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=649080 L3X25_RS04715 WP_002799191.1 910651..911619(+) (ceuB) [Campylobacter coli strain M8]
TTGCTTTTTAAACACTTGTTTAGTTTAAATATTCTTTTAATTTTACTTGTTGTTTTTGGAATAATAAGCTTATTTATAGG
GGTTATTCGTATCAATTTAGACGATATTTTTTCACTCAGCACTACCCAGCTCGAAATCATTTTACTTACAAGAATTCCAA
GGCTTATTGCAATTTTGCTTACAGGTATGAGTCTTAGTATATGCGGACTCATCATGCAACAACTCACGCAAAATAAATTT
GTTTCTCCAACCACTGCAGGGACTATGGATTGTGCTAAATTTGGCATTTTGATTTCTTTAATATTTTTTACAGGAGCTTC
TTTTTTTACTCAAACTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTCTAAGAAAAATTA
AACTTAAAGATGTGATTTTTGTGCCTTTGATAGGATTAATGTTTGGTGGGATTATAAATGCTATAACCACTTTTTTTGCT
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAGGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTTTATATTTCTTTACCGCTTTTTATACTTGCTTATTTTCTAGCCCATAAAATCACTATAGCAGGTATGGGAGAAGATC
TTGCTTTAAATCTTGGAGTTTCTTATAATACAATCTTATTTTTAGGCTTAATAATAGTTTCTATTATCACTAGCGTAGTG
ATTGTAAGCATTGGAGTTATACCTTTTTTAGGTCTTATCATCCCTAATCTTGTTGCCATTTATCGCGGGGATAATCTTAA
GAAAAATCTTATCTATATAGCATTATGCGGGGCTTTGTTTTTACTTATTTGCGATATTATCTCAAGACTTGTGATTTTTC
CTTTTGAAATGCCTTTGAGTATAACCACAGGTGTTTTGGGCTCTTTAATTTTTATTTTTCTTTTACTCAAAAGGAAAACT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2L7K2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

89.441

100

0.894