Detailed information NTG0649074

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: L3X25_RS03580
• Genome accession: NZ_CP091310
• Coordinates: 688547..689491 (+)
• Length: 314 a.a.
• NCBI ID: WP_070263200.1
• Uniprot ID: -
• Organism: Campylobacter coli strain M8
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 683547..694491

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L3X25_RS03550 (L3X25_03550)	-	683751..684665 (-)	915	WP_057040300.1	hypothetical protein	-
L3X25_RS03555 (L3X25_03555)	-	684669..685340 (-)	672	WP_002794362.1	acetyltransferase	-
L3X25_RS03560 (L3X25_03560)	-	685337..685732 (-)	396	WP_002794360.1	FdtA/QdtA family cupin domain-containing protein	-
L3X25_RS03565 (L3X25_03565)	rfbB	685729..686760 (-)	1032	WP_002794358.1	dTDP-glucose 4,6-dehydratase	-
L3X25_RS03570 (L3X25_03570)	rfbA	686764..687642 (-)	879	WP_002782985.1	glucose-1-phosphate thymidylyltransferase RfbA	-
L3X25_RS03575 (L3X25_03575)	-	687652..688488 (-)	837	WP_002799677.1	glycosyltransferase family 2 protein	-
L3X25_RS03580 (L3X25_03580)	waaF	688547..689491 (+)	945	WP_070263200.1	lipopolysaccharide heptosyltransferase II	Regulator
L3X25_RS03585 (L3X25_03585)	-	689484..690246 (-)	763	Protein_696	glycosyltransferase family 25 protein	-
L3X25_RS03590 (L3X25_03590)	gmhA	690246..690806 (-)	561	WP_057034370.1	D-sedoheptulose 7-phosphate isomerase	-
L3X25_RS03595 (L3X25_03595)	rfaE1	690803..692188 (-)	1386	WP_224307903.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
L3X25_RS03600 (L3X25_03600)	rfaD	692181..693134 (-)	954	WP_004283871.1	ADP-glyceromanno-heptose 6-epimerase	-
L3X25_RS03605 (L3X25_03605)	-	693131..693694 (-)	564	WP_002787747.1	HAD family hydrolase	-
L3X25_RS03610 (L3X25_03610)	-	693771..694070 (+)	300	WP_002777238.1	cytochrome c	-
L3X25_RS03615 (L3X25_03615)	-	694100..694300 (-)	201	WP_002777240.1	cbb3-type cytochrome oxidase assembly protein	-

Sequence

Protein

• Length: 314 a.a.
• Molecular weight: 36029.57 Da
• Isoelectric Point: 10.3260

>NTDB_id=649074 L3X25_RS03580 WP_070263200.1 688547..689491(+) (waaF) [Campylobacter coli strain M8]
MKIFIHLPTWLGDAVMASSALYGVYHHFKNAEFILYGSFVSTALFKEFPNAKIIIENKKSRYKQALSLRKKLGKIDLALS
FRSALSSKIILHILKAKKRYFFNKYDFKEEHQVLKYLYFIENSLEIKAHSKDLKLPFKLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAQVALNFSKTHEILIFGAGKAEQELCDEIFHILKEKNVKVKNLCNKTTIKTLCQNIVFCDIFITNDS
GPMHIAAAYKTKTIAIFGPTKFTQTSPWQNQNAKLVHLNLSCMPCMQKTCPLKHHRCMKDLKPEKILEAIQNFT

Nucleotide

• Length: 945 bp

>NTDB_id=649074 L3X25_RS03580 WP_070263200.1 688547..689491(+) (waaF) [Campylobacter coli strain M8]
ATGAAAATTTTTATCCATCTTCCCACTTGGCTAGGCGATGCGGTTATGGCTTCATCTGCTTTATATGGAGTTTATCATCA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACGGCACTTTTTAAAGAATTTCCTAATGCTAAAATCA
TTATAGAAAATAAAAAATCACGCTACAAGCAAGCCCTCTCTTTGCGTAAAAAACTTGGAAAAATAGATCTAGCCCTTTCT
TTTAGATCAGCCCTTTCTTCCAAGATCATTTTGCACATCCTGAAAGCAAAAAAAAGATATTTTTTTAACAAATATGATTT
TAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCATTAGAAATTAAAGCTCATTCTAAGGATTTAA
AACTTCCTTTTAAATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCCTAGGATTAAACCCTGGAGCG
AGTTTTGGAAGTGCTAAAAGATGGGATGCGAGCTATTTTGCACAAGTTGCTTTAAATTTTAGCAAAACTCATGAAATTTT
GATTTTTGGAGCAGGTAAAGCAGAACAAGAACTTTGCGATGAAATTTTTCATATACTAAAAGAAAAAAATGTCAAAGTAA
AAAATCTTTGCAATAAAACCACTATCAAAACCCTTTGTCAAAATATCGTTTTTTGTGATATTTTCATCACAAACGATAGC
GGCCCTATGCACATAGCTGCCGCTTATAAAACAAAAACCATAGCTATTTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATCAAAATGCAAAATTAGTACATCTAAATTTATCTTGCATGCCTTGCATGCAAAAAACCTGTCCTTTAAAAC
ATCATCGGTGCATGAAAGATTTAAAACCGGAAAAAATTTTAGAAGCAATCCAAAATTTTACTTAA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (106-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	83.387	99.682	0.831