Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L2Y90_RS14870 Genome accession   NZ_CP091307
Coordinates   3194087..3195463 (+) Length   458 a.a.
NCBI ID   WP_258281527.1    Uniprot ID   -
Organism   Burkholderia pyrrocinia strain LWK2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3189087..3200463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Y90_RS14850 (L2Y90_14820) - 3189627..3190592 (+) 966 WP_258281524.1 DUF1853 family protein -
  L2Y90_RS14855 (L2Y90_14825) thiD 3190611..3191420 (-) 810 WP_258281525.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  L2Y90_RS14860 (L2Y90_14830) lplT 3191479..3192786 (-) 1308 WP_034184726.1 lysophospholipid transporter LplT -
  L2Y90_RS14865 (L2Y90_14835) alr 3193005..3194075 (+) 1071 WP_258281526.1 alanine racemase -
  L2Y90_RS14870 (L2Y90_14840) radA 3194087..3195463 (+) 1377 WP_258281527.1 DNA repair protein RadA Machinery gene
  L2Y90_RS14875 (L2Y90_14845) - 3195610..3195876 (+) 267 WP_034184728.1 DUF2866 domain-containing protein -
  L2Y90_RS14880 (L2Y90_14850) abc-f 3196043..3197974 (-) 1932 WP_258281528.1 ribosomal protection-like ABC-F family protein -
  L2Y90_RS14885 (L2Y90_14855) - 3198111..3198590 (+) 480 WP_152863955.1 glutathione peroxidase -
  L2Y90_RS14890 (L2Y90_14860) cls 3198655..3200103 (-) 1449 WP_258281529.1 cardiolipin synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48851.26 Da        Isoelectric Point: 6.7606

>NTDB_id=649065 L2Y90_RS14870 WP_258281527.1 3194087..3195463(+) (radA) [Burkholderia pyrrocinia strain LWK2]
MAKQKTVYVCSECGGQTPKWQGQCPSCQAWNTLVESVAESPSAHRFQSLAKRAPVQRLVDIEAADVPRFSTGIGEFDRVL
GGGLVPGGVVLIGGDPGIGKSTLLLQSLADIASERRALYISGEESAAQIALRAQRLALLDGGTPAAELQLLAEIQLEKIQ
AAIDAERPDVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEIQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTAALIPKANAPKQPIEGLNVMAVERLEQAIDRVRDLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=649065 L2Y90_RS14870 WP_258281527.1 3194087..3195463(+) (radA) [Burkholderia pyrrocinia strain LWK2]
GTGGCCAAACAGAAAACCGTCTATGTCTGCAGCGAGTGCGGCGGACAGACCCCGAAGTGGCAGGGGCAGTGTCCGTCGTG
CCAGGCCTGGAACACGCTGGTCGAATCGGTCGCCGAGTCGCCGTCGGCCCACCGTTTCCAGTCGCTCGCGAAGCGGGCGC
CCGTCCAGCGCCTCGTCGACATCGAAGCGGCCGACGTGCCGCGCTTCTCGACGGGCATCGGCGAATTCGACCGCGTGCTC
GGCGGCGGGCTGGTCCCCGGCGGCGTCGTGCTGATCGGCGGCGACCCGGGCATCGGCAAGTCGACGCTGCTGCTGCAGTC
GCTCGCCGACATCGCGAGCGAGCGGCGCGCGCTCTATATCAGCGGCGAGGAGTCGGCCGCGCAGATCGCGTTGCGCGCGC
AACGACTTGCGCTGCTCGACGGCGGTACGCCGGCGGCCGAGCTGCAGCTGCTCGCCGAGATCCAGCTCGAAAAGATCCAG
GCCGCGATCGACGCGGAGCGGCCGGACGTGGCCGTGATCGACTCGATCCAGACCGTCTATTCGGAGGCGCTCACGTCGGC
GCCGGGCTCGGTCGCGCAGGTGCGCGAATGCGCGGCGCAGCTCACGCGCATCGCGAAACAGTCGGGCACCGCGATCATCA
TGGTCGGGCACGTGACGAAGGAGGGCAACCTGGCCGGCCCGCGCGTGCTCGAGCACATCGTCGACACGGTGCTGTATTTC
GAGGGCGACACGCATTCGTCGTTCCGGCTCGTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAACTCGGCGTGTT
CGCGATGACCGAGCGCGGGCTGCGTGGCGTCGCGAATCCGTCCGCGCTGTTCCTGTCGCAGCACGAGCAGGTCGTGCCCG
GCTCGTGCGTGCTCGTCACGCAGGAAGGCACGCGTCCGCTGCTCGTCGAAATCCAGGCGCTCGTCGATACCGCGCATGTG
CCGAACCCGCGCCGGCTCGCGGTCGGCCTCGAACAGAACCGGCTCGCGATGCTGCTCGCAGTGCTGCACCGGCACGCGGG
CATCGCGTGCTTCGACCAGGACGTGTTCCTCAATGCAGTGGGCGGCGTGAAGATCACCGAGCCGGCCGCCGATCTCGCGG
TGCTGCTCGCGATCCATTCGTCGATGCGCAACAAGGCGCTGCCGAAGGGGCTGATCGTGTTCGGCGAAGTGGGGCTGGCG
GGTGAAATCCGGCCGTCCCCGCGCGGGCAGGAGCGGCTGCGCGAGGCGGCGAAGCTCGGCTTTACGGCCGCGCTGATCCC
GAAGGCGAATGCGCCGAAACAGCCGATCGAAGGGCTGAACGTGATGGCCGTCGAGCGGCTCGAGCAAGCGATCGACCGCG
TGCGCGATCTCGAGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.458

100

0.498
  radA Streptococcus pneumoniae Rx1

46.638

100

0.469
  radA Streptococcus pneumoniae D39

46.638

100

0.469
  radA Streptococcus pneumoniae R6

46.638

100

0.469
  radA Streptococcus pneumoniae TIGR4

46.638

100

0.469
  radA Streptococcus mitis SK321

46.943

100

0.469
  radA Streptococcus mitis NCTC 12261

46.608

99.782

0.465