Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA71_RS15020 Genome accession   NZ_CP107916
Coordinates   3305665..3306345 (-) Length   226 a.a.
NCBI ID   WP_328438151.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00444     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3300665..3311345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA71_RS15000 (OHA71_14990) - 3301014..3302690 (+) 1677 WP_328355319.1 sensor histidine kinase -
  OHA71_RS15005 (OHA71_14995) - 3302687..3303367 (+) 681 WP_328438148.1 response regulator -
  OHA71_RS15010 (OHA71_15000) - 3303453..3305045 (-) 1593 WP_328438149.1 cation acetate symporter -
  OHA71_RS15015 (OHA71_15005) - 3305042..3305596 (-) 555 WP_328438150.1 DUF485 domain-containing protein -
  OHA71_RS15020 (OHA71_15010) vraR 3305665..3306345 (-) 681 WP_328438151.1 response regulator transcription factor Regulator
  OHA71_RS15025 (OHA71_15015) - 3306342..3307502 (-) 1161 WP_328438152.1 histidine kinase -
  OHA71_RS15030 (OHA71_15020) - 3307499..3308023 (-) 525 WP_328438153.1 DUF1453 domain-containing protein -
  OHA71_RS15035 (OHA71_15025) - 3308529..3310652 (-) 2124 WP_328438154.1 DNA topoisomerase IV subunit B -
  OHA71_RS15040 (OHA71_15030) - 3311094..3311321 (+) 228 WP_328355339.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24148.61 Da        Isoelectric Point: 5.0249

>NTDB_id=649039 OHA71_RS15020 WP_328438151.1 3305665..3306345(-) (vraR) [Streptomyces sp. NBC_00444]
MTEETEVEPARVVVADDQTVVREGIVMLLGLLPGIEVVGAAGDGDEAVKLVAELAPDVVLMDLRMPRCDGVEATRRIRSE
HPGTQVVVLTTYADDESLFPALRAGARGYLTKDAGGDEIVRAVRSVLSGDAGLSPSIQRRLLERLSDPEPPAARAVPPDG
LTARETEVLELIAEGLSNSEIAKKLHVSTATIKTHVNNIFTKARIKDRAQAVRYAFAKGLARPPTG

Nucleotide


Download         Length: 681 bp        

>NTDB_id=649039 OHA71_RS15020 WP_328438151.1 3305665..3306345(-) (vraR) [Streptomyces sp. NBC_00444]
ATGACGGAGGAGACGGAGGTCGAGCCCGCGCGGGTGGTGGTCGCGGACGACCAGACCGTCGTCCGCGAGGGCATCGTGAT
GTTGCTTGGGCTGCTCCCCGGGATCGAGGTCGTCGGTGCCGCGGGAGACGGGGACGAGGCGGTGAAGCTCGTCGCCGAAC
TCGCCCCGGACGTGGTTCTGATGGACCTGCGCATGCCCCGCTGCGATGGAGTGGAGGCGACGCGACGGATCCGGAGCGAG
CATCCCGGGACGCAGGTCGTGGTGCTCACCACCTACGCGGACGACGAGTCTCTGTTTCCGGCGCTGAGAGCGGGAGCGCG
CGGGTATCTCACCAAGGACGCGGGAGGTGACGAGATCGTCCGGGCGGTGCGCAGCGTGCTGTCCGGGGACGCGGGACTGT
CGCCGAGCATCCAACGACGGTTGCTGGAGCGGCTGTCGGACCCGGAACCGCCGGCGGCGCGGGCGGTGCCGCCCGACGGG
CTCACCGCGCGGGAGACTGAGGTGCTGGAGCTGATCGCCGAAGGGCTCAGCAACTCTGAGATCGCCAAGAAGCTGCATGT
CTCCACGGCCACGATCAAGACCCACGTCAACAACATCTTCACCAAGGCGAGGATCAAGGACCGTGCTCAGGCGGTGCGTT
ACGCGTTCGCGAAAGGGCTGGCGCGGCCGCCGACGGGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(12-123)

Bacterial regulatory proteins, luxR family (GerE)

(160-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.094

93.805

0.376