Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHA71_RS12390 Genome accession   NZ_CP107916
Coordinates   2710818..2711849 (-) Length   343 a.a.
NCBI ID   WP_328353879.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00444     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2705818..2716849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA71_RS12380 (OHA71_12380) - 2707064..2709319 (-) 2256 WP_328437800.1 glycoside hydrolase family 3 N-terminal domain-containing protein -
  OHA71_RS12385 (OHA71_12385) - 2709425..2710555 (-) 1131 WP_328437801.1 cellulose binding domain-containing protein -
  OHA71_RS12390 (OHA71_12390) cytR 2710818..2711849 (-) 1032 WP_328353879.1 LacI family DNA-binding transcriptional regulator Regulator
  OHA71_RS12395 (OHA71_12395) - 2711947..2713527 (-) 1581 WP_328442311.1 AMP-binding protein -
  OHA71_RS12400 (OHA71_12400) - 2713542..2715212 (-) 1671 WP_328437802.1 AMP-binding protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37104.33 Da        Isoelectric Point: 6.0807

>NTDB_id=649034 OHA71_RS12390 WP_328353879.1 2710818..2711849(-) (cytR) [Streptomyces sp. NBC_00444]
MGRQRPGSPTLEEVAALAGVGRGTVSRVINNAAGVKESTRRTVERAIAELGYVPNLAARSLAGRRADAVALAMTERDWRL
FGEPFFSEIVQSVGDALADTSVQLLLTLVRTDAERRRFVEYARGGRVDGVLLMSVRAEDRLPDMLAEAGLPTVLLGRRSG
DEHITYVDADNVGGARGAVEHLLRGGRRRIAAVTGPLDMYVTQCRLRGYREALAAAGLDPLPSLVVEGDFTEASGRRATA
ELLEKHPDMDAVFAASDTMAAGALGVLRAAGRRVPEDVAVIGFDDFPLGQHTAPPLTTVRQPLEEIGETMVRLLMEELRE
TGQPEVAWRHVILRTRLVVRDSA

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=649034 OHA71_RS12390 WP_328353879.1 2710818..2711849(-) (cytR) [Streptomyces sp. NBC_00444]
ATGGGCAGGCAGCGCCCTGGGTCGCCGACGCTGGAGGAGGTCGCGGCCCTCGCCGGTGTCGGGCGCGGCACCGTCTCGCG
GGTCATCAACAACGCGGCGGGCGTGAAGGAGTCGACGCGCCGTACCGTCGAGCGGGCCATCGCCGAGCTGGGCTATGTGC
CCAATCTGGCGGCCCGCTCGCTGGCCGGGCGGCGCGCGGACGCCGTGGCGCTGGCGATGACGGAGCGGGACTGGCGGCTG
TTCGGGGAGCCGTTCTTCTCGGAGATCGTCCAGTCGGTCGGCGACGCCCTCGCCGACACCTCGGTGCAGTTGCTGCTCAC
CCTGGTCCGCACGGACGCCGAGCGGCGGCGCTTCGTCGAGTACGCGCGCGGCGGGCGGGTGGACGGCGTCCTGCTGATGT
CCGTGCGTGCCGAGGACCGGCTGCCCGACATGCTCGCCGAGGCCGGTCTGCCCACCGTGCTGCTCGGGCGCCGCTCGGGC
GACGAGCACATCACCTACGTGGACGCGGACAACGTCGGCGGCGCCCGCGGCGCGGTCGAGCACCTGCTGCGCGGTGGCCG
CAGGAGGATCGCCGCCGTCACCGGGCCGCTCGACATGTACGTCACCCAGTGCCGGCTGCGCGGCTACCGGGAAGCGCTGG
CCGCCGCGGGCCTCGATCCGCTGCCCTCGCTGGTCGTCGAGGGTGACTTCACCGAGGCCAGTGGGCGCCGGGCGACGGCC
GAACTCCTCGAGAAGCACCCGGACATGGACGCCGTCTTCGCCGCCTCGGACACCATGGCCGCCGGGGCGCTGGGCGTGCT
GCGTGCCGCCGGCCGCCGGGTGCCCGAGGACGTCGCGGTGATCGGGTTCGACGACTTCCCGCTCGGCCAGCACACCGCAC
CCCCGCTGACGACGGTCCGCCAGCCGCTGGAGGAGATCGGCGAGACCATGGTGCGGCTGCTGATGGAGGAGCTGCGGGAG
ACGGGGCAGCCCGAGGTGGCCTGGCGCCATGTCATCCTGCGCACCCGGCTGGTGGTCCGCGACTCGGCCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(179-342)

Bacterial regulatory proteins, lacI family (LacI)

(10-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.752

100

0.376
  cytR Vibrio parahaemolyticus RIMD 2210633

36.103

100

0.367