Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHA71_RS09140 Genome accession   NZ_CP107916
Coordinates   1978115..1979119 (-) Length   334 a.a.
NCBI ID   WP_328351997.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00444     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1973115..1984119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA71_RS09115 (OHA71_09115) - 1973166..1974794 (+) 1629 WP_328437355.1 ABC-F family ATP-binding cassette domain-containing protein -
  OHA71_RS09120 (OHA71_09120) ddaH 1974892..1975668 (+) 777 WP_328351987.1 N(G),N(G)-dimethylarginine dimethylaminohydrolase -
  OHA71_RS09125 (OHA71_09125) - 1975867..1976841 (+) 975 WP_328437356.1 acyl-ACP desaturase -
  OHA71_RS09130 (OHA71_09130) - 1976861..1977106 (-) 246 WP_210575325.1 WhiB family transcriptional regulator -
  OHA71_RS09135 (OHA71_09135) - 1977185..1977976 (-) 792 WP_328437357.1 VOC family protein -
  OHA71_RS09140 (OHA71_09140) cytR 1978115..1979119 (-) 1005 WP_328351997.1 LacI family DNA-binding transcriptional regulator Regulator
  OHA71_RS09145 (OHA71_09145) - 1979197..1980192 (-) 996 WP_328437358.1 multicopper oxidase domain-containing protein -
  OHA71_RS09150 (OHA71_09150) - 1980382..1982862 (+) 2481 WP_328437359.1 ThuA domain-containing protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 35894.78 Da        Isoelectric Point: 5.6878

>NTDB_id=649024 OHA71_RS09140 WP_328351997.1 1978115..1979119(-) (cytR) [Streptomyces sp. NBC_00444]
MTETAPRPTLEAVAARAGVSRATVSRVVNGGDGVREPLVERVRRAVEELGYVPNQAARSLVTRRHDAVAVVVAEPETRVF
ADPFFALQLRGISKELTAHDNQLVLLLTEGRDDHARVGRYLAGGHVDGALVFSLHLDDPLPELIQRAGIPTVFGGRPGWS
DGTSGVVYVDSDNRGGAREAVRHLVGLGRTRVAHITGALDQTSAVDRLDGFRDVMADVDPRLVVEGDFTPAGGERAMREL
LDRCPDVDAVFAANDLTAAGALRVLRERGRRVPDDVAVIGFDDMLPVAEQTDPPLTTVRQDIEEMGRLMARLLLKGPAPG
GVVLPTTLVRRVSA

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=649024 OHA71_RS09140 WP_328351997.1 1978115..1979119(-) (cytR) [Streptomyces sp. NBC_00444]
GTGACCGAAACCGCCCCGCGTCCCACCCTGGAGGCCGTGGCCGCCCGGGCCGGGGTGTCCCGGGCCACCGTGTCCCGTGT
GGTGAACGGCGGGGACGGCGTGCGGGAACCTCTGGTGGAGCGGGTGCGACGGGCCGTGGAGGAACTGGGGTACGTCCCCA
ATCAGGCCGCCCGCAGTCTGGTCACGCGGCGGCACGACGCCGTCGCCGTCGTCGTCGCCGAACCGGAGACACGGGTCTTC
GCCGACCCCTTCTTCGCGCTGCAACTCCGGGGAATCAGCAAGGAGCTGACGGCGCACGACAACCAGCTCGTCCTGCTGCT
GACCGAGGGGCGCGACGACCACGCGCGCGTGGGGCGCTATCTCGCCGGGGGCCATGTCGACGGCGCCCTCGTCTTCTCCC
TGCACCTGGACGATCCACTGCCCGAGTTGATCCAGCGCGCGGGAATCCCGACCGTGTTCGGCGGCCGGCCCGGCTGGAGC
GACGGCACGAGCGGCGTGGTCTACGTCGACAGCGACAACCGCGGCGGCGCCCGCGAGGCCGTACGCCACCTCGTCGGCCT
CGGCCGCACCCGCGTCGCGCACATCACCGGTGCCCTCGACCAGACCTCCGCGGTGGACCGGCTCGACGGGTTCCGGGACG
TCATGGCCGACGTCGATCCGCGGCTCGTCGTGGAGGGCGACTTCACGCCGGCCGGCGGTGAGCGGGCGATGCGGGAACTC
CTCGACCGGTGCCCCGACGTGGACGCCGTCTTCGCCGCGAACGACCTGACCGCCGCGGGCGCCCTGCGGGTGCTGCGCGA
GCGCGGGCGGCGGGTGCCGGACGACGTCGCCGTGATCGGTTTCGACGACATGCTGCCGGTCGCCGAACAGACCGACCCGC
CGCTGACGACGGTCCGTCAGGACATCGAGGAGATGGGCCGGTTGATGGCGCGGCTGCTGTTGAAGGGCCCGGCGCCGGGC
GGTGTGGTGCTGCCCACGACGCTGGTGCGACGGGTCTCGGCGTAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(181-333)

Bacterial regulatory proteins, lacI family (LacI)

(9-54)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.673

100

0.365