Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG800_RS47175 Genome accession   NZ_CP107914
Coordinates   10312425..10313087 (-) Length   220 a.a.
NCBI ID   WP_328371094.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00445     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 10307425..10318087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG800_RS47150 (OG800_47130) - 10307767..10308339 (-) 573 WP_328371080.1 GNAT family N-acetyltransferase -
  OG800_RS47155 (OG800_47135) - 10308383..10308973 (-) 591 WP_328371083.1 TetR/AcrR family transcriptional regulator -
  OG800_RS47160 (OG800_47140) - 10309154..10310062 (+) 909 WP_328371086.1 chlorophyllase -
  OG800_RS47165 (OG800_47145) - 10310198..10311412 (+) 1215 WP_328371088.1 MFS transporter -
  OG800_RS47170 (OG800_47150) - 10311423..10312277 (+) 855 WP_328371091.1 alpha/beta hydrolase-fold protein -
  OG800_RS47175 (OG800_47155) vraR 10312425..10313087 (-) 663 WP_328371094.1 response regulator transcription factor Regulator
  OG800_RS47180 (OG800_47160) - 10313062..10314234 (-) 1173 WP_328371097.1 histidine kinase -
  OG800_RS47185 (OG800_47165) - 10314410..10316680 (+) 2271 WP_328371099.1 MMPL family transporter -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23454.23 Da        Isoelectric Point: 5.3360

>NTDB_id=649018 OG800_RS47175 WP_328371094.1 10312425..10313087(-) (vraR) [Streptomyces sp. NBC_00445]
MSIRVLVADDQTIIRTGLRIMLNAQPGIEVVGEAADGQEAVRLARELRPDVCLFDIRMPVLDGLEATRLVAGPGVADPLA
VVVITTFDLDEYVYGALRAGARGFLLKDTGPDLLAQAVRSASGGEALIAPSVTVRLLQTFADLPAGRPVTQPVSPVTARE
EQVLLAVARGLTNTEIADALHISLSTVKTHLASLMAKLGARNRVEIAMWAYETRRILPGT

Nucleotide


Download         Length: 663 bp        

>NTDB_id=649018 OG800_RS47175 WP_328371094.1 10312425..10313087(-) (vraR) [Streptomyces sp. NBC_00445]
GTGTCCATTCGCGTCCTCGTCGCTGACGACCAGACGATCATCCGCACCGGGTTGCGGATCATGCTGAACGCCCAGCCCGG
CATCGAGGTGGTCGGCGAGGCCGCCGACGGACAGGAGGCGGTACGTCTGGCCCGCGAACTGCGCCCCGACGTCTGCCTGT
TCGACATCCGCATGCCCGTACTCGACGGGCTCGAGGCCACCCGGCTGGTCGCCGGCCCGGGCGTCGCCGACCCGCTGGCC
GTGGTCGTCATCACCACGTTCGACCTCGACGAGTACGTCTACGGCGCGCTGCGTGCCGGCGCCCGCGGATTCCTCCTCAA
GGACACGGGACCAGACCTTCTGGCCCAGGCCGTACGGTCGGCGTCCGGCGGTGAGGCGCTCATCGCGCCCAGCGTCACCG
TCCGTCTGCTCCAGACATTCGCGGACCTGCCCGCCGGCCGGCCCGTGACCCAGCCGGTCTCCCCCGTCACCGCCCGCGAG
GAGCAGGTGCTCCTCGCCGTCGCTCGCGGGCTGACCAACACCGAGATCGCCGATGCACTGCACATCAGCCTCAGCACGGT
GAAGACACATCTGGCCAGCCTGATGGCCAAACTCGGCGCCCGCAACCGGGTCGAGATCGCGATGTGGGCCTACGAAACGC
GCCGTATCCTCCCCGGAACCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.037

98.182

0.364