Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG800_RS45975 Genome accession   NZ_CP107914
Coordinates   10048079..10048738 (-) Length   219 a.a.
NCBI ID   WP_328370508.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00445     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 10043079..10053738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG800_RS45955 (OG800_45935) urtA 10043626..10044882 (-) 1257 WP_328370496.1 urea ABC transporter substrate-binding protein -
  OG800_RS45960 (OG800_45940) - 10045095..10046207 (-) 1113 WP_328370499.1 substrate-binding domain-containing protein -
  OG800_RS45965 (OG800_45945) - 10046471..10046911 (+) 441 WP_328370503.1 MarR family transcriptional regulator -
  OG800_RS45970 (OG800_45950) - 10047133..10048023 (+) 891 WP_328370506.1 glycoside hydrolase family 19 protein -
  OG800_RS45975 (OG800_45955) vraR 10048079..10048738 (-) 660 WP_328370508.1 response regulator transcription factor Regulator
  OG800_RS45980 (OG800_45960) - 10048735..10049862 (-) 1128 WP_328370509.1 sensor histidine kinase -
  OG800_RS45985 (OG800_45965) - 10050099..10050494 (+) 396 WP_328370510.1 DUF6223 family protein -
  OG800_RS45990 (OG800_45970) - 10050602..10051837 (+) 1236 WP_328370512.1 acyltransferase -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23845.65 Da        Isoelectric Point: 5.0976

>NTDB_id=649009 OG800_RS45975 WP_328370508.1 10048079..10048738(-) (vraR) [Streptomyces sp. NBC_00445]
MIRVLLVDDQPLIRSGFRALLDLEDDIEVVAEAADGAEGLALIKEQLPDVALIDIQMPVMDGIEATRRIAADPALAGVHV
VMLTNYGMDEYVFEALRAGAAGFLVKDIVPEDFLHAVRVAARGDALLAPSITRKLIHRYVTQPLPTTGAALTELTGRERE
AVTLVAQGLSNDQIADRMVISPMTAKTHINRAMTKLHTRDRAQLVVLAYESGLVIPRNH

Nucleotide


Download         Length: 660 bp        

>NTDB_id=649009 OG800_RS45975 WP_328370508.1 10048079..10048738(-) (vraR) [Streptomyces sp. NBC_00445]
ATGATCCGTGTCCTGCTGGTCGACGACCAGCCGCTCATCCGCAGCGGTTTCCGCGCACTGCTCGACCTCGAGGACGACAT
CGAGGTGGTGGCCGAGGCCGCCGACGGCGCGGAGGGCCTGGCACTCATCAAGGAGCAGTTGCCCGACGTCGCGCTCATCG
ACATCCAGATGCCGGTCATGGACGGCATCGAGGCGACCCGGCGCATCGCCGCGGACCCCGCCCTGGCCGGTGTGCACGTC
GTCATGCTGACCAACTACGGCATGGACGAGTACGTCTTCGAAGCGCTGCGCGCCGGTGCCGCCGGTTTCCTGGTCAAGGA
CATCGTGCCGGAGGACTTTCTGCACGCCGTACGGGTCGCCGCCCGAGGCGACGCCCTGCTCGCCCCGTCCATCACCCGCA
AGCTGATCCACCGGTACGTCACCCAGCCCCTCCCCACCACCGGCGCCGCGCTCACGGAGCTGACCGGCCGGGAACGCGAG
GCGGTCACCCTGGTCGCACAGGGCCTGTCCAACGACCAGATCGCCGACCGCATGGTGATCAGCCCGATGACCGCGAAGAC
CCACATCAACCGGGCGATGACGAAACTCCACACCCGCGACCGCGCCCAACTCGTCGTCCTCGCCTACGAGTCCGGCCTGG
TCATCCCGCGCAACCACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.318

97.717

0.374