Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   L1971_RS05950 Genome accession   NZ_CP091300
Coordinates   1012568..1013173 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Bovismorbificans strain SB699     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1007568..1018173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1971_RS05935 (L1971_05935) helD 1007785..1009839 (-) 2055 WP_021000159.1 DNA helicase IV -
  L1971_RS05940 (L1971_05940) - 1009963..1010409 (+) 447 WP_021000158.1 YccF domain-containing protein -
  L1971_RS05945 (L1971_05945) yccS 1010428..1012581 (+) 2154 WP_000950876.1 YccS family putative transporter -
  L1971_RS05950 (L1971_05950) sxy/tfoX 1012568..1013173 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  L1971_RS05955 (L1971_05955) sulA 1013390..1013899 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  L1971_RS05960 (L1971_05960) ompA 1014256..1015308 (+) 1053 WP_001670727.1 porin OmpA -
  L1971_RS05965 (L1971_05965) matP 1015380..1015832 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  L1971_RS05970 (L1971_05970) - 1016018..1017778 (+) 1761 WP_024792698.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=649001 L1971_RS05950 WP_001202375.1 1012568..1013173(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Bovismorbificans strain SB699]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=649001 L1971_RS05950 WP_001202375.1 1012568..1013173(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Bovismorbificans strain SB699]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751