Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG800_RS34265 Genome accession   NZ_CP107914
Coordinates   7476065..7477798 (-) Length   577 a.a.
NCBI ID   WP_328364892.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00445     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7471065..7482798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG800_RS34255 (OG800_34230) - 7472727..7474001 (+) 1275 WP_328364886.1 RNA polymerase sigma factor -
  OG800_RS34260 (OG800_34235) rcrQ 7474137..7476065 (-) 1929 WP_328364889.1 ABC transporter ATP-binding protein Regulator
  OG800_RS34265 (OG800_34240) rcrP 7476065..7477798 (-) 1734 WP_328364892.1 ABC transporter ATP-binding protein Regulator
  OG800_RS34270 (OG800_34245) - 7477982..7479436 (-) 1455 WP_328364895.1 FGGY family carbohydrate kinase -
  OG800_RS34275 (OG800_34250) - 7479588..7479887 (-) 300 WP_210574173.1 YtxH domain-containing protein -
  OG800_RS34295 (OG800_34270) - 7481377..7481610 (+) 234 WP_053672219.1 type II toxin-antitoxin system VapB family antitoxin -
  OG800_RS34300 (OG800_34275) - 7481607..7482014 (+) 408 WP_328364909.1 PIN domain nuclease -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62681.00 Da        Isoelectric Point: 6.1301

>NTDB_id=648984 OG800_RS34265 WP_328364892.1 7476065..7477798(-) (rcrP) [Streptomyces sp. NBC_00445]
MLIRLLRTYLRPYRKPIAVLVLLQFLQTCATLYLPTLNADIIDNGVVNGDTGYILSYGALMIGISLVQVVCNIGAVYYGA
RTAAALGRDVRGAVFDRVQSFSAREVGHFGAPTLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIVLALGLDVPLSGV
LVAVVPVLGICVTLIVRRLRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDEYEQQRFRHANAELTEMSLATGKLLAL
MFPMVMTVVNLSSIAVVWFGAHRIDSGGMEIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PTAPVVKLLRHGHLEMRGAGFRYPGAEEPVLKAVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVAVA
SLEPKLLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKEFVERLEGGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETAEATVVIVAQRVATIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=648984 OG800_RS34265 WP_328364892.1 7476065..7477798(-) (rcrP) [Streptomyces sp. NBC_00445]
GTGCTCATACGACTTCTGCGGACCTATCTCAGGCCCTACAGAAAACCCATCGCCGTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTACCTGCCCACGCTGAACGCCGACATCATCGACAACGGTGTCGTGAACGGAGACACCGGCTACA
TCCTTTCCTACGGCGCCCTGATGATCGGCATCTCGCTGGTGCAGGTCGTCTGCAACATCGGTGCCGTGTACTACGGCGCT
CGTACGGCGGCGGCGCTCGGCCGTGACGTCCGGGGTGCCGTCTTCGACCGGGTGCAGTCCTTCTCCGCCCGTGAGGTCGG
TCATTTCGGGGCGCCCACGCTGATCACGCGGACGACCAATGACGTCCAACAGGTGCAGATGCTGGCGCTGATGACGTTCA
CGCTGCTCGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCGTGCTGGCGCTGGGCCTGGATGTGCCGCTGTCAGGGGTG
CTGGTCGCCGTGGTGCCGGTGCTGGGCATCTGCGTGACGTTGATCGTGCGGCGGCTGCGGCCGCTGTTCCGGACGATGCA
GGAGCGGCTGGACACCGTGAACCGGGTGCTGCGGGAGCAGATCACCGGCAACCGGGTGATCCGCGCCTTCGTCCGCGACG
AGTACGAGCAGCAGCGCTTCCGGCACGCCAACGCCGAGCTCACCGAGATGTCCCTGGCCACCGGCAAGCTGCTGGCGCTG
ATGTTCCCGATGGTGATGACGGTGGTGAACCTGTCGTCGATCGCAGTGGTGTGGTTCGGCGCGCATCGCATCGACAGCGG
TGGGATGGAGATCGGCGATCTGACGGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGGATCCAGGAGGTGCTGGACACCTCCTCCAGTGTGGTTCCG
CCGACCGCGCCCGTGGTCAAGCTGCTCAGGCACGGGCATCTGGAGATGCGCGGGGCCGGGTTCCGCTACCCGGGTGCCGA
GGAGCCGGTGCTGAAGGCCGTCGACCTGGTGGCCCGGCCCGGTGAGACGACCGCCGTGATCGGCTCGACCGGCAGCGGCA
AGTCCACGCTGCTGGGACTGGTGCCGCGGCTGTTCGACGCGACCGACGGGGAGGTGCTCGTCGACGGCGTCGCGGTGGCC
TCCCTCGAACCGAAGCTGCTGGCGAAGACGGTCGGGCTCGTCCCGCAGAAGCCGTATCTCTTCGCGGGCACGGTGGCGAC
CAATCTGCGGTACGGCAATCCGGACGCGACGGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGAGTTCG
TGGAGCGGCTCGAAGGCGGGCTCGACTCGCCGATCGCGCAGGGCGGCACGAACGTCTCCGGTGGTCAGCGGCAGCGGCTC
GCGATCGCCCGCACGCTGGTCCAGCGGCCGGAGATCTATCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCGACCGA
CGCGGCGTTGCGTGCCGCGCTCGCCCGGGAGACCGCCGAGGCGACCGTCGTGATCGTCGCCCAGCGGGTGGCGACCATCC
GGGACGCGGACCGGATCGTCGTACTCGATGAAGGGCGGGTGGTCGGGACAGGCCGGCACCACGAGCTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.884

94.107

0.385