Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG800_RS34260 Genome accession   NZ_CP107914
Coordinates   7474137..7476065 (-) Length   642 a.a.
NCBI ID   WP_328364889.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00445     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7469137..7481065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG800_RS34245 (OG800_34220) - 7469349..7470614 (+) 1266 WP_328364881.1 FAD-dependent oxidoreductase -
  OG800_RS34250 (OG800_34225) dnaG 7470663..7472561 (+) 1899 WP_328364884.1 DNA primase -
  OG800_RS34255 (OG800_34230) - 7472727..7474001 (+) 1275 WP_328364886.1 RNA polymerase sigma factor -
  OG800_RS34260 (OG800_34235) rcrQ 7474137..7476065 (-) 1929 WP_328364889.1 ABC transporter ATP-binding protein Regulator
  OG800_RS34265 (OG800_34240) rcrP 7476065..7477798 (-) 1734 WP_328364892.1 ABC transporter ATP-binding protein Regulator
  OG800_RS34270 (OG800_34245) - 7477982..7479436 (-) 1455 WP_328364895.1 FGGY family carbohydrate kinase -
  OG800_RS34275 (OG800_34250) - 7479588..7479887 (-) 300 WP_210574173.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69725.06 Da        Isoelectric Point: 5.6977

>NTDB_id=648983 OG800_RS34260 WP_328364889.1 7474137..7476065(-) (rcrQ) [Streptomyces sp. NBC_00445]
MAGPAGRMMAGTGPEHRSMDFKGSGKRLVAQFRPERLTICALLLCVVVSVGLSVVGPKILGHATDLVFAGIVGRQFEAGS
TKEQVLDAMRERGDGSVADMLRSTDFTPGQGVDFDAVGSVLLLALGVFVVAGLLMLVATRLVNRSVNRTMYRMREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSVLTIIGVLAMMFWVSWILALVALVTVPLSFVVATRVGK
RSQPHFVQQWRSTGKLNAHVEEMYTGHALVKVFGRQDESARQFAEQNDALYEAGFKAQFNSGIMQPLMMFVSNINYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASSERIFEVLDAEEQEADPMPGERPEELRGRVALE
HVSFRYDPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIARMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASREVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGAIVEQGAHGELLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=648983 OG800_RS34260 WP_328364889.1 7474137..7476065(-) (rcrQ) [Streptomyces sp. NBC_00445]
ATGGCCGGGCCTGCAGGGCGGATGATGGCCGGGACGGGGCCGGAGCACCGCTCGATGGACTTCAAGGGGTCGGGCAAACG
GCTCGTCGCCCAGTTCAGACCCGAACGGCTCACGATCTGCGCGCTGCTGCTGTGCGTGGTGGTGAGCGTGGGCCTGTCGG
TGGTCGGGCCGAAGATCCTCGGTCATGCGACCGACCTGGTCTTCGCGGGCATCGTCGGGCGGCAGTTCGAGGCCGGGTCC
ACCAAGGAGCAGGTGCTCGATGCGATGCGGGAGCGGGGTGACGGCTCGGTCGCCGACATGCTCCGCAGCACGGACTTCAC
GCCGGGTCAGGGCGTCGACTTCGATGCGGTCGGCTCCGTACTGCTGCTCGCGCTGGGCGTGTTCGTGGTGGCGGGGCTGC
TGATGCTGGTGGCGACGCGGCTGGTGAACCGTTCCGTGAACCGGACGATGTACCGGATGCGGGAGGACGTACAGACGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTGCTGTCCCGTGCCACCAACGACATCGACAA
CATCGGGCAGACGTTGCAGCAGTCGATGGGGCAGCTCATCAACTCCGTGCTCACCATCATCGGTGTGCTCGCGATGATGT
TCTGGGTGTCCTGGATCCTGGCGCTGGTGGCGCTGGTGACCGTGCCGCTGTCGTTCGTCGTCGCCACCCGGGTCGGGAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGCTCCACCGGCAAGCTCAACGCGCACGTCGAGGAGATGTACACCGGGCA
CGCGCTGGTGAAGGTGTTCGGGCGGCAGGACGAGTCGGCGCGGCAGTTCGCCGAGCAGAACGACGCGTTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACATCAACTACGTGCTGGTCGCG
GTGGTCGGTGGCCTGCGGGTCGCGTCCGGCTCGCTGTCCATCGGTGACGTGCAGGCCTTCATCCAGTACTCCCGGCAGTT
CTCCATGCCGCTCACGCAGGTCGCGTCGATGGCGAACCTCGTGCAGTCCGGGGTCGCCTCGTCCGAGCGGATCTTCGAAG
TCCTCGACGCCGAGGAGCAGGAGGCCGATCCGATGCCGGGCGAGCGGCCGGAGGAGCTGCGCGGGCGGGTGGCGCTGGAG
CATGTGTCCTTCCGGTACGACCCCGAGAAGCCGCTCATCGAGGATCTGTCGCTGAAGGTCGAGCCCGGGCACACAGTCGC
GATCGTGGGCCCCACGGGGGCCGGCAAGACCACCCTCGTCAATCTGCTGATGCGGTTCTACGAGGTCTCCGGCGGGCGGA
TCACCCTCGACGGCGTCGACATCGCCCGGATGTCCCGGGACGAACTGCGTGCCGGGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGGACCATCGCCGAGAACATCGCGTACGGGGCGTCCAGGGAGGTCACCCGGGGCGAGATCGAAGAGGC
GGCTCGGGCGGCACACGCGGACCGGTTCGTCCGGACGCTGCCGGATGGGTACGACACCGTGATCGACGACGAGGGGACAG
GGGTCAGCGCGGGTGAGAAGCAGCTGATCACCATCGCGCGGGCGTTTCTGTCCGATCCGGTGATCCTGGTGCTGGACGAG
GCGACGAGTTCTGTGGACACGCGGACCGAGGTGCTGATTCAGAAGGCGATGGCGAAGCTGGCGCACGGGCGTACGTCGTT
CGTCATCGCGCATCGGCTGTCGACGATTCGGGATGCCGACACGATTCTGGTGATGGAGAACGGGGCGATCGTGGAACAGG
GGGCGCACGGGGAGTTGCTGGCGGCCGACGGGGCTTATGCGCGGCTGTACAAGGCGCAGTTCGCGCAGGCGGTGGCTGAG
GTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(40-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.777

96.262

0.393