Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG800_RS33645 Genome accession   NZ_CP107914
Coordinates   7322568..7323233 (+) Length   221 a.a.
NCBI ID   WP_328364663.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00445     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7317568..7328233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG800_RS33630 (OG800_33610) - 7318375..7319070 (+) 696 WP_328364659.1 TerB family tellurite resistance protein -
  OG800_RS33635 (OG800_33615) - 7319214..7321301 (+) 2088 WP_328364661.1 MMPL family transporter -
  OG800_RS33640 (OG800_33620) - 7321405..7322571 (+) 1167 WP_328372377.1 histidine kinase -
  OG800_RS33645 (OG800_33625) vraR 7322568..7323233 (+) 666 WP_328364663.1 response regulator transcription factor Regulator
  OG800_RS33650 (OG800_33630) - 7323267..7324445 (+) 1179 WP_328364665.1 sialidase family protein -
  OG800_RS33655 (OG800_33635) - 7324681..7325190 (+) 510 WP_328364667.1 sigma-70 family RNA polymerase sigma factor -
  OG800_RS33660 (OG800_33640) - 7325187..7326413 (+) 1227 WP_328364669.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23463.06 Da        Isoelectric Point: 4.5834

>NTDB_id=648980 OG800_RS33645 WP_328364663.1 7322568..7323233(+) (vraR) [Streptomyces sp. NBC_00445]
MTIRVLLADDQTLVRAAFAMLVESAPDMEVVGQAATGREALELARTERADLVVMDIRMPDLDGIEATRQIAAEEDLAGVK
VLVLTTYDTDEHIIEALRAGASGFLVKDTRPAELLDAIRTVAAGEALLSPGPTARLIERLLRSPSAPPAAGGPECLSERE
RGVLTLVARGLNNTEIAETLGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYESGMVTPGTM

Nucleotide


Download         Length: 666 bp        

>NTDB_id=648980 OG800_RS33645 WP_328364663.1 7322568..7323233(+) (vraR) [Streptomyces sp. NBC_00445]
GTGACCATCCGCGTCCTGCTCGCCGACGACCAGACCCTCGTCAGGGCCGCGTTCGCCATGCTCGTCGAGTCCGCGCCGGA
CATGGAGGTCGTGGGACAGGCCGCGACCGGCCGCGAGGCACTGGAACTGGCCCGCACCGAACGCGCCGACCTGGTGGTGA
TGGACATCCGCATGCCCGACCTGGACGGCATCGAGGCGACACGGCAGATCGCCGCCGAGGAGGACCTGGCCGGCGTCAAG
GTCCTCGTCCTCACCACCTACGACACCGACGAGCACATCATCGAGGCGCTGCGGGCCGGCGCCTCCGGGTTCCTCGTGAA
GGACACCCGTCCGGCCGAACTGCTCGACGCGATCCGCACGGTGGCGGCAGGGGAGGCGCTGCTGTCGCCGGGGCCGACGG
CACGGCTGATCGAGCGACTTCTGCGCAGCCCTTCGGCTCCACCGGCGGCGGGCGGGCCCGAATGTCTGTCCGAACGGGAG
CGCGGGGTGCTCACCCTGGTGGCGCGCGGGCTCAACAACACCGAGATCGCCGAGACCTTGGGGCTGAGCCCGCTGACGGC
GAAGACGCACGTCAGCCGCATCATGGGGAAGCTGGGGGCGAGGGACCGGGCGCAATTGGTCATCGTGGCGTACGAGTCGG
GGATGGTCACACCGGGGACCATGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-210)

Response regulator receiver domain (Response_reg)

(5-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.963

97.738

0.371