Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG800_RS29470 Genome accession   NZ_CP107914
Coordinates   6390141..6391136 (+) Length   331 a.a.
NCBI ID   WP_328362927.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00445     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 6385141..6396136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG800_RS29445 (OG800_29435) - 6385346..6385993 (+) 648 WP_210576543.1 TetR/AcrR family transcriptional regulator -
  OG800_RS29450 (OG800_29440) - 6386174..6387715 (+) 1542 WP_328362919.1 MFS transporter -
  OG800_RS29455 (OG800_29445) - 6387924..6388451 (-) 528 WP_328362921.1 MarR family transcriptional regulator -
  OG800_RS29460 (OG800_29450) - 6388582..6389373 (+) 792 WP_328362923.1 class III extradiol ring-cleavage dioxygenase -
  OG800_RS29465 (OG800_29455) - 6389426..6389944 (-) 519 WP_328362925.1 N-acetyltransferase family protein -
  OG800_RS29470 (OG800_29460) rpoS 6390141..6391136 (+) 996 WP_328362927.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG800_RS29475 (OG800_29465) - 6391610..6392215 (+) 606 WP_328372242.1 TetR family transcriptional regulator -
  OG800_RS29480 (OG800_29470) - 6392304..6393269 (-) 966 WP_328362929.1 WYL domain-containing protein -
  OG800_RS29485 (OG800_29475) - 6393332..6394846 (+) 1515 WP_328362931.1 MFS transporter -
  OG800_RS29490 (OG800_29480) - 6395019..6395780 (+) 762 WP_210576535.1 DeoR/GlpR family DNA-binding transcription regulator -

Sequence

Protein


Download         Length: 331 a.a.        Molecular weight: 36963.65 Da        Isoelectric Point: 4.9641

>NTDB_id=648969 OG800_RS29470 WP_328362927.1 6390141..6391136(+) (rpoS) [Streptomyces sp. NBC_00445]
MATGAVARRQSAKGGTDAARSVRAHGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFARQVLDGEAESQVDA
TREELEALIAEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAIT
RSIADQSRTIRLPVHLVEELGRIRRIQREFNRENGREPEPAEIAAELGSTPERVTDVLDWARDPVSLNMSVDDDGDTQFG
DLLEDTSAVSPEQSVLTLLRSEGLEDLISRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALMELKK
LARDTGFDAAA

Nucleotide


Download         Length: 996 bp        

>NTDB_id=648969 OG800_RS29470 WP_328362927.1 6390141..6391136(+) (rpoS) [Streptomyces sp. NBC_00445]
ATGGCAACCGGTGCCGTCGCCCGTCGTCAGTCCGCCAAGGGCGGGACCGACGCGGCACGCAGTGTTCGCGCCCACGGCGG
CGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGCACACCGCTGCTCGACGCCGCCAAGGAGG
TCGAGCTGTCTCAGACCATCGAGGCGGGTGTGTTCGCGCGACAGGTCCTCGACGGCGAGGCGGAGTCCCAGGTGGACGCC
ACCCGCGAGGAGCTCGAGGCACTGATCGCCGAGGGTGAGCGGGCCAAGGACGTCTTCATCCGCTCCAACCTCCGCCTGGT
CGTCGCCGTGGCCCGCCGCTACCCCCGCAGCGGCCTGCCCCTGCTGGACCTCATCCAGGAGGGCAACGCCGGTCTGGTGC
GCGCGGTGGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGCCAGGCCATCACC
CGCTCGATAGCCGACCAGTCCCGCACCATCCGGCTGCCCGTCCACCTGGTGGAGGAGCTGGGCCGGATCCGCCGCATCCA
GCGCGAGTTCAACCGGGAGAACGGCCGCGAGCCGGAGCCCGCCGAGATCGCCGCCGAGCTCGGCTCGACGCCGGAGCGCG
TGACGGACGTCCTGGACTGGGCCCGCGACCCGGTCTCGCTCAACATGTCGGTGGACGACGACGGCGACACCCAGTTCGGC
GACCTGCTGGAGGACACCTCCGCGGTCTCGCCCGAGCAGTCGGTGCTGACGCTGCTGCGCAGCGAGGGCCTGGAAGACCT
GATCAGCCGCCTCGACCAGCGCACCGCCTCGATCATCAAGATGCGGTACGGCATCGAGGACGGCCGGGAGCGCACGCTGA
CCGAGGTCGGCAAGGAGCACGGCCTCACGCGCGAGCGGATCCGGCAGATCGAGAAGCACGCCCTGATGGAGCTGAAGAAG
CTGGCCCGGGACACCGGGTTCGACGCGGCGGCGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(178-254)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(33-66)

Sigma-70 region 2 (Sigma70_r2)

(99-168)

Sigma-70, region 4 (Sigma70_r4)

(268-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.468

90.332

0.366