Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L3C06_RS11830 Genome accession   NZ_CP091289
Coordinates   2442039..2443403 (-) Length   454 a.a.
NCBI ID   WP_236360373.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei subsp. paracasei strain GR0562     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2437039..2448403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3C06_RS11810 (L3C06_11810) - 2437329..2438600 (-) 1272 WP_236360371.1 MucBP domain-containing protein -
  L3C06_RS11815 (L3C06_11815) - 2438918..2439694 (-) 777 Protein_2317 ABC transporter permease -
  L3C06_RS11820 (L3C06_11820) - 2439712..2440599 (-) 888 WP_194853548.1 ABC transporter ATP-binding protein -
  L3C06_RS11825 (L3C06_11825) - 2440902..2442017 (-) 1116 WP_003567252.1 PIN/TRAM domain-containing protein -
  L3C06_RS11830 (L3C06_11830) radA 2442039..2443403 (-) 1365 WP_236360373.1 DNA repair protein RadA Machinery gene
  L3C06_RS11835 (L3C06_11835) - 2443420..2443962 (-) 543 WP_003567256.1 dUTP diphosphatase -
  L3C06_RS11840 (L3C06_11840) - 2444183..2444473 (+) 291 WP_003595964.1 GNAT family N-acetyltransferase -
  L3C06_RS11845 (L3C06_11845) - 2444590..2444967 (-) 378 WP_003567260.1 DUF805 domain-containing protein -
  L3C06_RS11850 (L3C06_11850) - 2445186..2446106 (+) 921 WP_003574021.1 IS30 family transposase -
  L3C06_RS11855 (L3C06_11855) - 2446267..2447586 (+) 1320 WP_236360375.1 aminopeptidase C -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49116.43 Da        Isoelectric Point: 7.4216

>NTDB_id=648962 L3C06_RS11830 WP_236360373.1 2442039..2443403(-) (radA) [Lacticaseibacillus paracasei subsp. paracasei strain GR0562]
MAKAKTQYVCQNCGYISATYLGRCPNCGGWNTLVEETVSSSKSVPRQTAAGSKVKPTRMNDVTITKETRVKTGLDELNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLANTGGTVLYVSGEESASQIKMRAGRLGVANSGMYLYPETDMPSIEDVI
NQMQPDYVVIDSVQTMNVPEMNSAVGSVAQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAGPKILEHMVDTVLYFEGD
MHHTYRILRSVKNRFGSTNEIGIFEMHQDGLQEVANPSEIFLEERLAGATGSAVVVSMEGTRPILVEIQALISPTMYGNA
KRTSSGLDHNRVSLIMAVLEKRANLMLQNQDAYLKATGGVKLDEPAIDLAMAVAIASSYRDKEISPTDCFVGEIGLTGEV
RRVNRIEERVKEAAKLGFKRIFVSRNNLQGWHAPKDIQVIGVTSIAEALHKVFN

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=648962 L3C06_RS11830 WP_236360373.1 2442039..2443403(-) (radA) [Lacticaseibacillus paracasei subsp. paracasei strain GR0562]
ATGGCGAAAGCAAAAACACAATATGTTTGCCAAAACTGTGGCTATATTTCAGCCACTTATCTAGGCCGGTGTCCAAATTG
CGGCGGCTGGAACACCTTAGTGGAAGAAACCGTCAGTTCAAGCAAGTCTGTGCCGCGACAAACAGCAGCCGGCAGTAAGG
TAAAGCCGACGCGGATGAACGATGTGACGATCACCAAAGAAACGCGCGTCAAGACTGGCTTAGATGAACTGAACCGGGTG
CTTGGCGGCGGAGTGGTGCCAGGGTCACTGGTGCTGATCGGCGGGGATCCGGGGATTGGTAAATCAACCTTGCTATTACA
AGTGTCAGGGCAGTTGGCTAATACCGGCGGAACCGTTTTGTATGTCTCTGGCGAAGAAAGTGCCAGTCAGATCAAAATGC
GGGCTGGCCGGCTTGGCGTGGCAAATTCGGGGATGTACTTGTATCCCGAAACCGACATGCCGAGTATTGAAGACGTCATC
AACCAAATGCAGCCGGATTACGTTGTGATCGACTCCGTTCAAACTATGAATGTGCCAGAAATGAATTCAGCGGTCGGTTC
TGTGGCACAGATTCGCGAAGTGACGGCAGAACTGATGCGCATTGCCAAGTCCAAAGGCGTGACCATTTTCATCGTTGGCC
ATGTCACTAAGGAAGGGGCGATTGCCGGGCCGAAGATTCTTGAGCATATGGTCGACACGGTGCTCTATTTTGAAGGCGAC
ATGCACCACACGTATCGAATCTTAAGATCCGTCAAAAATCGATTTGGATCGACCAATGAAATCGGCATTTTCGAAATGCA
TCAAGACGGGTTACAGGAAGTCGCCAATCCCTCGGAAATCTTCTTGGAAGAACGCTTGGCGGGGGCAACCGGTTCTGCGG
TGGTTGTTTCGATGGAAGGCACCCGACCAATCTTAGTCGAGATTCAAGCCTTGATCAGTCCAACGATGTATGGCAATGCT
AAACGGACGAGCAGTGGGTTGGATCACAATCGAGTGAGCTTGATCATGGCCGTTCTTGAGAAGCGGGCTAACTTGATGTT
GCAAAATCAGGACGCCTATCTCAAGGCAACAGGCGGTGTGAAACTCGATGAGCCGGCGATTGACCTCGCCATGGCTGTGG
CAATTGCGTCATCTTATCGAGATAAGGAGATTTCACCGACAGATTGTTTTGTCGGTGAAATCGGATTGACGGGGGAAGTG
CGCCGCGTCAATCGGATCGAAGAACGTGTCAAAGAGGCGGCCAAACTGGGTTTCAAACGGATTTTTGTATCCCGTAACAA
CTTGCAAGGCTGGCATGCGCCAAAAGATATTCAAGTCATTGGTGTTACAAGCATTGCCGAAGCGCTGCATAAGGTCTTTA
ATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

67.991

99.78

0.678
  radA Streptococcus pneumoniae Rx1

67.991

99.78

0.678
  radA Streptococcus pneumoniae D39

67.991

99.78

0.678
  radA Streptococcus pneumoniae R6

67.991

99.78

0.678
  radA Streptococcus pneumoniae TIGR4

67.991

99.78

0.678
  radA Streptococcus mitis SK321

67.77

99.78

0.676
  radA Bacillus subtilis subsp. subtilis str. 168

64.537

100

0.645