Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG800_RS14610 Genome accession   NZ_CP107914
Coordinates   3210519..3211208 (-) Length   229 a.a.
NCBI ID   WP_328355327.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00445     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3205519..3216208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG800_RS14590 (OG800_14575) - 3205867..3207543 (+) 1677 WP_328355319.1 sensor histidine kinase -
  OG800_RS14595 (OG800_14580) - 3207540..3208220 (+) 681 WP_210576876.1 response regulator -
  OG800_RS14600 (OG800_14585) - 3208306..3209898 (-) 1593 WP_328355322.1 cation acetate symporter -
  OG800_RS14605 (OG800_14590) - 3209895..3210344 (-) 450 WP_328355325.1 DUF485 domain-containing protein -
  OG800_RS14610 (OG800_14595) vraR 3210519..3211208 (-) 690 WP_328355327.1 response regulator transcription factor Regulator
  OG800_RS14615 (OG800_14600) - 3211205..3212365 (-) 1161 WP_328355330.1 histidine kinase -
  OG800_RS14620 (OG800_14605) - 3212362..3212886 (-) 525 WP_328355333.1 DUF1453 domain-containing protein -
  OG800_RS14625 (OG800_14610) - 3213399..3215522 (-) 2124 WP_328355336.1 DNA topoisomerase IV subunit B -
  OG800_RS14630 (OG800_14615) - 3215964..3216191 (+) 228 WP_328355339.1 hypothetical protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 24318.78 Da        Isoelectric Point: 4.8921

>NTDB_id=648930 OG800_RS14610 WP_328355327.1 3210519..3211208(-) (vraR) [Streptomyces sp. NBC_00445]
MTEETEVEPARVVVADDQTVVREGIVMLLGLLPGIEVVGAAGDGDEAVKLVAELAPDVVLMDLRMPRCDGVEATRRIRSE
HPGTQVVVLTTYADDESLFPALRAGARGYLTKDAGGDEIVRAVRSVLSGDAGLSPSIQRRLLERLSDPEPPAAPAAPAVS
PDGLTARETEVLELIAEGLSNSEIAKKLHVSTATIKTHVNNIFTKARIKDRAQAVRYAFAKGLARPPTG

Nucleotide


Download         Length: 690 bp        

>NTDB_id=648930 OG800_RS14610 WP_328355327.1 3210519..3211208(-) (vraR) [Streptomyces sp. NBC_00445]
ATGACGGAGGAGACGGAGGTCGAGCCCGCGCGGGTGGTGGTCGCGGACGACCAGACCGTCGTCCGCGAGGGCATCGTGAT
GTTGCTTGGGCTGCTCCCCGGGATCGAGGTCGTCGGTGCCGCGGGAGACGGGGACGAGGCGGTGAAGCTCGTCGCCGAAC
TCGCCCCGGACGTGGTTCTGATGGACCTGCGCATGCCCCGCTGCGATGGAGTGGAGGCGACGCGACGGATCCGGAGCGAG
CATCCCGGGACGCAGGTCGTGGTGCTCACCACCTACGCGGACGACGAGTCTCTGTTTCCGGCGCTGAGAGCGGGAGCGCG
CGGGTATCTCACCAAGGACGCGGGAGGTGACGAGATCGTCCGGGCGGTGCGCAGCGTGCTGTCCGGGGACGCGGGACTGT
CGCCGAGCATCCAACGACGGTTGCTGGAGCGGCTGTCGGACCCGGAACCGCCGGCGGCGCCGGCGGCGCCGGCGGTGTCG
CCCGACGGGCTCACCGCGCGGGAGACCGAGGTGCTGGAGCTGATCGCCGAAGGGCTCAGCAACTCTGAGATCGCCAAGAA
GCTGCATGTCTCCACGGCCACGATCAAGACCCACGTCAACAACATCTTCACCAAGGCGAGGATCAAGGACCGTGCTCAGG
CGGTGCGTTACGCGTTCGCGAAAGGGCTGGCGCGGCCGCCGACGGGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(12-123)

Bacterial regulatory proteins, luxR family (GerE)

(163-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.07

93.886

0.367
  degU Bacillus subtilis subsp. subtilis str. 168

37.557

96.507

0.362