Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   L3C11_RS10455 Genome accession   NZ_CP091288
Coordinates   2060620..2061309 (+) Length   229 a.a.
NCBI ID   WP_196770545.1    Uniprot ID   -
Organism   Bacillus velezensis strain JJ47     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2055620..2066309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3C11_RS10430 (L3C11_10430) degS 2055903..2057066 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  L3C11_RS10435 (L3C11_10435) degU 2057143..2057832 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  L3C11_RS10440 (L3C11_10440) - 2057930..2058778 (+) 849 WP_032876160.1 DegV family protein -
  L3C11_RS10445 (L3C11_10445) comFA 2058887..2060272 (+) 1386 WP_032876163.1 DEAD/DEAH box helicase Machinery gene
  L3C11_RS10450 (L3C11_10450) - 2060330..2060614 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  L3C11_RS10455 (L3C11_10455) comFC 2060620..2061309 (+) 690 WP_196770545.1 phosphoribosyltransferase family protein Machinery gene
  L3C11_RS10460 (L3C11_10460) - 2061383..2061802 (+) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  L3C11_RS10465 (L3C11_10465) flgM 2061872..2062138 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  L3C11_RS10470 (L3C11_10470) - 2062153..2062635 (+) 483 WP_032876168.1 flagellar protein FlgN -
  L3C11_RS10475 (L3C11_10475) flgK 2062651..2064168 (+) 1518 WP_032876170.1 flagellar hook-associated protein FlgK -
  L3C11_RS10480 (L3C11_10480) flgL 2064180..2065097 (+) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  L3C11_RS10485 (L3C11_10485) - 2065188..2065757 (+) 570 WP_007407476.1 DUF6470 family protein -
  L3C11_RS10490 (L3C11_10490) fliW 2065787..2066218 (+) 432 WP_007407475.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25274.96 Da        Isoelectric Point: 8.4871

>NTDB_id=648905 L3C11_RS10455 WP_196770545.1 2060620..2061309(+) (comFC) [Bacillus velezensis strain JJ47]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAKGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=648905 L3C11_RS10455 WP_196770545.1 2060620..2061309(+) (comFC) [Bacillus velezensis strain JJ47]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCCGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CAAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594