Detailed information NTG0648898

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: L3C11_RS09485
• Genome accession: NZ_CP091288
• Coordinates: 1869323..1870468 (-)
• Length: 381 a.a.
• NCBI ID: WP_074534220.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain JJ47
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1864323..1875468

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L3C11_RS09460 (L3C11_09460)	-	1864606..1865039 (+)	434	Protein_1807	hypothetical protein	-
L3C11_RS09465 (L3C11_09465)	-	1865064..1867136 (-)	2073	WP_032875881.1	transglycosylase domain-containing protein	-
L3C11_RS09470 (L3C11_09470)	speE	1867336..1868166 (+)	831	WP_003151052.1	spermidine synthase	-
L3C11_RS09475 (L3C11_09475)	speB	1868225..1869097 (+)	873	WP_032875884.1	agmatinase	-
L3C11_RS09480 (L3C11_09480)	-	1869220..1869339 (-)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
L3C11_RS09485 (L3C11_09485)	rapF	1869323..1870468 (-)	1146	WP_074534220.1	Rap family tetratricopeptide repeat protein	Regulator
L3C11_RS09490 (L3C11_09490)	-	1870699..1872054 (+)	1356	WP_032875887.1	YncE family protein	-
L3C11_RS09495 (L3C11_09495)	-	1872094..1873470 (+)	1377	WP_032875890.1	YncE family protein	-
L3C11_RS09500 (L3C11_09500)	-	1873477..1873989 (-)	513	Protein_1815	bacteriocin biosynthesis protein AlbG	-
L3C11_RS09505 (L3C11_09505)	-	1874143..1874571 (+)	429	WP_032869448.1	DUF1934 domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45737.21 Da
• Isoelectric Point: 5.0614

>NTDB_id=648898 L3C11_RS09485 WP_074534220.1 1869323..1870468(-) (rapF) [Bacillus velezensis strain JJ47]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDAEKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLKNIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLENKLMYADIEELALDVAKYYYTQEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=648898 L3C11_RS09485 WP_074534220.1 1869323..1870468(-) (rapF) [Bacillus velezensis strain JJ47]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGTCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGCAGAAAAATATAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGGACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGTCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAAAAAATATAGATAACGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTAGAATACTTGTATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAATAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACACAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAGGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (188-254)

• Tetratricopeptide repeat (TPR_8) (265-293)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.079	100	0.701
rapC	Bacillus subtilis subsp. subtilis str. 168	54.211	99.738	0.541