Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   L3C11_RS05895 Genome accession   NZ_CP091288
Coordinates   1182978..1183415 (+) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain JJ47     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1177978..1188415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3C11_RS05880 (L3C11_05880) - 1180838..1181200 (-) 363 WP_007409352.1 winged helix-turn-helix transcriptional regulator -
  L3C11_RS05885 (L3C11_05885) hxlA 1181432..1182067 (+) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  L3C11_RS05890 (L3C11_05890) hxlB 1182064..1182621 (+) 558 WP_032872811.1 6-phospho-3-hexuloisomerase -
  L3C11_RS05895 (L3C11_05895) nucA/comI 1182978..1183415 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  L3C11_RS05900 (L3C11_05900) nin/comJ 1183436..1183834 (+) 399 WP_032872809.1 competence protein ComJ Regulator
  L3C11_RS05905 (L3C11_05905) - 1183875..1184093 (-) 219 Protein_1143 family 1 glycosylhydrolase -
  L3C11_RS19605 - 1184018..1184371 (-) 354 WP_079891133.1 family 1 glycosylhydrolase -
  L3C11_RS05910 (L3C11_05910) - 1184313..1184636 (-) 324 WP_032872805.1 YckD family protein -
  L3C11_RS05915 (L3C11_05915) - 1184709..1185143 (-) 435 WP_021494203.1 RDD family protein -
  L3C11_RS05920 (L3C11_05920) - 1185158..1186294 (-) 1137 WP_032872802.1 zinc-dependent alcohol dehydrogenase -
  L3C11_RS05925 (L3C11_05925) - 1186359..1187561 (-) 1203 WP_032872800.1 GTP-binding protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=648887 L3C11_RS05895 WP_003156588.1 1182978..1183415(+) (nucA/comI) [Bacillus velezensis strain JJ47]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=648887 L3C11_RS05895 WP_003156588.1 1182978..1183415(+) (nucA/comI) [Bacillus velezensis strain JJ47]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAAACCGTTCAGAAGAGTGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATTAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641