Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG370_RS19430 Genome accession   NZ_CP107913
Coordinates   4605282..4605881 (-) Length   199 a.a.
NCBI ID   WP_328465981.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00448     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4600282..4610881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - recR 4605282..4605881 (-) 600 - - Machinery gene

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21741.01 Da        Isoelectric Point: 5.4072

>NTDB_id=648868 OG370_RS19430 WP_328465981.1 4605282..4605881(-) (recR) [Streptomyces sp. NBC_00448]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQADPADVRRLAHTLSEVKAKVRFCAVCGNVAQEERCRVCSDPRRDPAV
ICVVEEPKDVVAVERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMVK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=648868 OG370_RS19430 WP_328465981.1 4605282..4605881(-) (recR) [Streptomyces sp. NBC_00448]
GTGTACGAAGGCGTGGTGCAGGACCTGATCGACGAGCTGGGCAGGCTGCCGGGCGTGGGGCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGACCCGGCCGACGTACGCCGGCTGGCGCACACGCTCTCCGAGGTCAAGGCGAAGGTGC
GGTTCTGCGCGGTGTGCGGGAACGTCGCGCAGGAGGAGCGCTGCCGGGTGTGCAGCGACCCGCGGCGCGACCCCGCGGTG
ATCTGCGTGGTCGAGGAGCCCAAGGACGTGGTGGCGGTCGAGCGCACCCGGGAGTTCCGCGGGCGGTACCACGTACTGGG
CGGCGCGATCAGCCCGATCGAGGGTGTCGGCCCCGACGATCTGCGGATACGGGAACTGCTCGCCCGCCTCGCCGACGGCA
CCGTCACCGAACTGATCCTGGCCACGGACCCGAACCTCGAAGGCGAGGCGACGGCCACGTATCTGGCCCGCATGGTGAAG
CCCATGGGTTTGCGCGTCACGCGACTGGCCAGTGGACTCCCGGTGGGCGGCGACTTGGAGTACGCGGACGAGGTCACGCT
GGGGCGGGCCTTCGAAGGGAGGCGGTTGCTGGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.082

98.492

0.533
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

45.876

97.487

0.447