Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   OG370_RS14170 Genome accession   NZ_CP107913
Coordinates   3352540..3353823 (-) Length   427 a.a.
NCBI ID   WP_328464172.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00448     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3347540..3358823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - clpX 3352540..3353823 (-) 1284 - - Regulator

Sequence

Protein


Download         Length: 427 a.a.        Molecular weight: 46658.54 Da        Isoelectric Point: 4.8576

>NTDB_id=648859 OG370_RS14170 WP_328464172.1 3352540..3353823(-) (clpX) [Streptomyces sp. NBC_00448]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAESSEVRWEDLPKPREIYEFLESYVVGQAP
AKKALSVAVYNHYKRVQAGESGRPGHDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDV
ENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI
DTTNVLFIVGGAFAGLEKIIEARAGAKGIGFGATIRSKRELNMADQFSEIMPEDLVKFGMIPEFIGRLPVITNVHNLDRE
ALLQILVEPRNALVKQYQKLFELDGVELEFERGALEAIADQAILRQTGARGLRAIMEEVLMSVMYEVPSRQDVARVVITA
DVVHSNVNPTLVPRDPRISGQGEQKSA

Nucleotide


Download         Length: 1284 bp        

>NTDB_id=648859 OG370_RS14170 WP_328464172.1 3352540..3353823(-) (clpX) [Streptomyces sp. NBC_00448]
GTGGCACGCATCGGTGACGGCGGAGACCTGCTGAAGTGCTCGTTCTGCGGAAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCAGGTCCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAGGAGGAGCTCGCCGAGTCCT
CCGAGGTGCGCTGGGAGGACCTGCCCAAGCCGCGGGAGATCTACGAGTTCCTGGAGAGCTACGTGGTCGGGCAGGCGCCC
GCCAAGAAGGCCCTCTCGGTCGCGGTGTACAACCACTACAAGCGGGTCCAGGCGGGGGAGAGCGGCCGCCCTGGCCACGA
CGACGCCATCGAGCTGGCGAAGTCCAACATCCTGCTGCTCGGCCCGACCGGCTCCGGCAAGACGCTGCTGGCCCAGACGC
TGGCCCGGATGCTCAACGTGCCGTTCGCCATCGCCGACGCCACCGCGCTCACCGAGGCCGGCTACGTCGGTGAGGACGTC
GAGAACATCCTGCTGAAGCTGATCCAAGCGGCGGACTACGACGTCAAGAAGGCCGAGACCGGCATCATCTACATCGACGA
GATCGACAAGGTCGCCCGCAAGAGCGAGAACCCGTCGATCACCCGCGATGTCTCCGGCGAGGGCGTCCAGCAGGCGCTGC
TGAAGATCCTGGAGGGCACCACCGCCTCCGTGCCGCCGCAGGGCGGCCGCAAGCACCCGCACCAGGAGTTCATCCAGATC
GACACCACGAACGTGCTGTTCATCGTGGGCGGCGCCTTCGCCGGTCTGGAGAAGATCATCGAGGCGCGGGCGGGCGCCAA
GGGCATCGGCTTCGGTGCGACCATCCGCTCCAAGCGCGAGCTGAACATGGCCGACCAGTTCTCCGAGATCATGCCGGAGG
ACCTGGTGAAGTTCGGCATGATCCCCGAGTTCATCGGCCGGCTGCCCGTGATCACCAACGTGCACAACCTCGACCGCGAG
GCGCTGCTGCAGATCCTGGTCGAGCCGCGCAACGCGCTGGTCAAGCAGTACCAGAAGCTCTTCGAACTCGACGGCGTGGA
GCTGGAGTTCGAGCGTGGCGCGCTGGAGGCCATCGCCGACCAGGCGATCCTGCGGCAGACCGGCGCCCGTGGCCTGCGCG
CCATCATGGAGGAGGTGCTGATGTCGGTGATGTACGAAGTGCCGTCCCGCCAGGACGTCGCCCGCGTGGTCATCACCGCC
GACGTCGTGCACTCCAACGTCAACCCGACCCTGGTGCCGCGCGACCCGCGCATCTCGGGCCAGGGCGAGCAGAAGAGCGC
GTAG

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(317-394)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(114-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

63.591

93.911

0.597
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.745

96.253

0.527