Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG370_RS13050 Genome accession   NZ_CP107913
Coordinates   3084172..3085908 (+) Length   578 a.a.
NCBI ID   WP_328463757.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00448     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3079172..3090908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - rcrP 3084172..3085908 (+) 1737 - - Regulator

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 62504.81 Da        Isoelectric Point: 6.2736

>NTDB_id=648856 OG370_RS13050 WP_328463757.1 3084172..3085908(+) (rcrP) [Streptomyces sp. NBC_00448]
MLIRLLRSHLRPYKRPIAVLVLLQLLSTIGALYLPTLNADIIDNGVVKGDTGYIVGLGGVMLGVTVVQMACAIGAVFFGA
RTAMAVGRDIRSSVFTQVQSFSAREVGQFGAPSLITRTTNDVQQVQMLVLMSFTLMVAAPIMCVGGIIMALGQDVPLSAL
LLVVVPVLGVSVSLIVRRMRPLFRTMQKRVDSVNRVLREQITGIRVIRAFVKDDYEQRRFGAANDELTAVSLSTGRLMAL
MFPTVMAIVNISSVAVLWFGAHRIDSGGMQIGALTAFLSYLMQILMSVMMATFMFMMVPRAEVCAERIEEVLGTDSSVVP
PTAPITALRRHGHLELRGATFAYPGAEVAVLREVDLEARPGQTTAVIGSTGSGKSTLLGLIPRLYDATAGRVLVDGEDVA
QVDPALLAETVGLVPQKPYLFSGTVASNLRYGKPDATDEELWHALKVAQAEDFVRKLDGELEAPIAQGGSNVSGGQRQRL
AIARCLVRRPEIYLFDDSFSALDYATDAALRRALAEETAEATVVIVAQRVSTIRDADRIIVLDEGRVVGTGTHTELMQDN
ETYREIVLSQLTEQEAAA

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=648856 OG370_RS13050 WP_328463757.1 3084172..3085908(+) (rcrP) [Streptomyces sp. NBC_00448]
GTGCTGATCCGACTCCTACGGTCCCACCTGCGACCGTACAAACGCCCCATCGCGGTGCTGGTGCTGCTCCAGCTGCTCTC
CACGATCGGTGCCCTGTACCTGCCGACCCTCAACGCCGACATCATCGACAACGGCGTGGTCAAGGGCGACACCGGCTACA
TCGTCGGGCTGGGCGGGGTCATGCTCGGTGTGACCGTCGTGCAGATGGCGTGCGCGATCGGCGCGGTCTTCTTCGGCGCG
CGCACCGCGATGGCCGTCGGCCGCGACATCCGCAGTTCCGTCTTCACGCAGGTGCAGAGCTTCTCCGCCCGCGAGGTCGG
CCAGTTCGGGGCGCCGTCGCTGATCACCCGGACCACCAACGACGTCCAGCAGGTCCAGATGCTGGTGCTGATGAGCTTCA
CGCTCATGGTGGCCGCGCCGATCATGTGCGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTCCCGCTGTCGGCGCTG
CTGCTCGTGGTGGTGCCGGTGCTCGGTGTCTCGGTGAGCCTGATCGTCCGCAGGATGCGCCCGCTCTTCCGCACCATGCA
GAAGCGCGTCGACTCGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGTATCCGCGTGATCCGCGCGTTCGTCAAGGACG
ACTACGAGCAGCGCCGGTTCGGCGCCGCCAACGACGAGCTGACCGCGGTGTCGCTGTCCACCGGGCGGCTGATGGCGCTG
ATGTTCCCGACCGTGATGGCGATCGTGAACATCTCCAGCGTGGCCGTGCTGTGGTTCGGCGCGCACCGGATCGACAGCGG
CGGGATGCAGATCGGCGCGCTCACCGCGTTCCTCAGCTACCTGATGCAGATCCTGATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGGATCGAGGAGGTGCTCGGCACCGACTCAAGCGTGGTCCCG
CCGACCGCGCCGATCACCGCCCTGCGCCGGCACGGCCACCTCGAACTGCGCGGCGCCACCTTCGCCTACCCGGGCGCCGA
GGTGGCCGTGCTGCGCGAGGTCGACCTGGAGGCCCGGCCTGGCCAGACCACCGCGGTGATCGGCTCCACCGGCAGCGGCA
AGTCCACCCTGCTCGGCCTGATCCCGCGGCTGTACGACGCGACCGCCGGCCGGGTGCTGGTCGACGGCGAGGACGTCGCC
CAGGTCGATCCCGCGCTGCTCGCCGAGACCGTCGGCCTGGTACCGCAGAAGCCGTACCTGTTCTCCGGCACCGTCGCCAG
CAACCTGCGCTACGGCAAGCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGAAGGTCGCGCAGGCCGAGGACTTCG
TCCGCAAGCTCGACGGCGAGCTGGAGGCGCCGATCGCCCAGGGCGGCAGCAACGTCTCCGGCGGCCAGCGGCAGCGGCTG
GCGATCGCCCGCTGCCTGGTGCGCCGCCCCGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCCACCGA
CGCGGCGCTGCGCCGCGCGCTCGCGGAGGAGACCGCCGAGGCCACCGTCGTGATCGTCGCCCAGCGGGTCTCCACGATCC
GCGACGCGGACCGCATCATCGTCCTCGACGAGGGCCGGGTGGTCGGCACGGGCACCCACACCGAACTGATGCAGGACAAC
GAGACCTACCGGGAGATCGTGTTGTCCCAGCTCACCGAGCAGGAGGCGGCGGCGTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.366

91.176

0.377