Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L2Z92_RS07625 Genome accession   NZ_CP091285
Coordinates   1705284..1706645 (-) Length   453 a.a.
NCBI ID   WP_236458228.1    Uniprot ID   -
Organism   Flavobacterium jumunjinense strain HME7102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1700284..1711645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z92_RS07600 fabF 1700346..1701599 (+) 1254 WP_236458223.1 beta-ketoacyl-ACP synthase II -
  L2Z92_RS07605 rnc 1701606..1702349 (+) 744 WP_236458224.1 ribonuclease III -
  L2Z92_RS07610 - 1702464..1702937 (+) 474 WP_236458225.1 IPExxxVDY family protein -
  L2Z92_RS07615 pyk 1702943..1704373 (+) 1431 WP_236458226.1 pyruvate kinase -
  L2Z92_RS07620 - 1704409..1705167 (+) 759 WP_236458227.1 Bax inhibitor-1/YccA family protein -
  L2Z92_RS07625 radA 1705284..1706645 (-) 1362 WP_236458228.1 DNA repair protein RadA Machinery gene
  L2Z92_RS07630 - 1706648..1707856 (-) 1209 WP_236458229.1 alpha/beta hydrolase -
  L2Z92_RS07635 - 1707895..1708854 (-) 960 WP_236458230.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  L2Z92_RS07640 panD 1708857..1709207 (-) 351 WP_236458231.1 aspartate 1-decarboxylase -
  L2Z92_RS07645 panC 1709293..1710141 (-) 849 WP_236458232.1 pantoate--beta-alanine ligase -
  L2Z92_RS07650 - 1710249..1711055 (+) 807 WP_236458233.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49964.54 Da        Isoelectric Point: 6.1938

>NTDB_id=648856 L2Z92_RS07625 WP_236458228.1 1705284..1706645(-) (radA) [Flavobacterium jumunjinense strain HME7102]
MSKVKTSFFCQNCGTSFSKWQGQCHACKEWNTIAEEIIQKEEKKAWKTESNTVSKATKPLLIKEIDSTQEIRLNTTDGEL
NRVLGGGLVPGSLTLLGGEPGIGKSTLLLQISLKLPYKTLYVSGEESQKQIKMRAERIVPNSDNCYILTETKTQNIFKQI
QEMQPEIVIIDSIQTLHTDYIESSAGSISQIRECTAELIKFAKETNVPVILIGHITKDGTIAGPKILEHMVDTVLQFEGD
RNHVYRILRSLKNRFGSTAELGIYEMLGNGLREVDNPSEILISHKEESLSGTAIACTLEGMRPLMIEIQSLVSSAVYGTP
QRSTTGYNAKRLNMILAVLEKRAGFRLGMKDVFLNVTGGISVDDTAIDLAVVAAILSSNEDIGIEEGFCFAGEVGLSGEI
RPVNRIDQRIQEAEKLGFTTILVSKHNKISIKNNIIKVVLVSKIEDVVSELFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=648856 L2Z92_RS07625 WP_236458228.1 1705284..1706645(-) (radA) [Flavobacterium jumunjinense strain HME7102]
ATGAGTAAAGTTAAAACTTCTTTTTTTTGCCAAAATTGCGGAACTTCTTTTTCTAAATGGCAAGGACAGTGTCATGCATG
TAAAGAATGGAATACAATTGCAGAGGAAATTATTCAAAAAGAAGAGAAAAAAGCTTGGAAAACAGAATCTAACACCGTTT
CTAAAGCTACTAAGCCTTTACTCATAAAAGAAATTGATAGCACACAAGAAATTAGACTTAACACTACCGATGGAGAGTTA
AATAGAGTTCTTGGCGGTGGTCTTGTTCCTGGTTCTTTAACTCTTTTGGGAGGTGAACCTGGTATTGGAAAAAGTACATT
ATTACTTCAAATTTCTTTAAAACTACCTTACAAAACGCTTTACGTTTCTGGAGAAGAGAGTCAGAAACAAATAAAAATGC
GTGCAGAAAGAATAGTTCCAAATAGTGATAACTGCTATATTCTAACAGAAACCAAAACACAAAATATATTTAAACAAATT
CAGGAAATGCAACCTGAAATTGTTATTATAGATTCGATACAAACACTACACACTGATTATATTGAATCTTCTGCAGGAAG
CATCTCACAAATTAGAGAATGTACCGCAGAACTTATAAAATTTGCTAAAGAGACAAACGTTCCCGTAATTCTAATTGGTC
ATATTACAAAAGATGGAACAATTGCAGGTCCAAAGATATTAGAACACATGGTAGACACCGTCCTTCAATTTGAAGGCGAC
AGAAACCATGTTTACAGAATTCTTCGCTCTTTAAAAAATCGTTTTGGATCTACAGCAGAATTAGGCATTTATGAAATGCT
CGGCAACGGCTTAAGAGAAGTTGATAATCCGTCAGAAATATTAATCTCTCATAAAGAAGAATCACTTTCTGGAACCGCTA
TCGCTTGCACACTTGAAGGAATGCGTCCGTTAATGATAGAGATTCAGTCCCTTGTAAGTTCGGCTGTATATGGAACTCCA
CAACGAAGTACAACGGGCTACAATGCAAAACGATTAAATATGATTTTGGCTGTTTTAGAAAAAAGAGCAGGATTTCGACT
AGGAATGAAAGATGTTTTTCTTAATGTAACAGGAGGAATCTCTGTAGACGATACTGCAATTGATTTAGCAGTTGTTGCTG
CAATTTTATCATCTAATGAAGACATTGGTATAGAAGAAGGCTTTTGCTTTGCAGGAGAAGTTGGTTTATCTGGTGAAATT
AGACCCGTAAACCGAATTGACCAACGTATTCAAGAAGCTGAAAAACTAGGCTTTACTACTATTTTAGTTTCTAAACACAA
TAAAATATCCATCAAGAATAATATAATAAAGGTAGTTCTTGTTTCTAAAATTGAAGACGTTGTTAGTGAATTGTTTGGGT
AG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(66-219)

Subunit ChlI of Mg-chelatase (ChlI)

(335-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

48.246

100

0.486
  radA Streptococcus mitis SK321

48.246

100

0.486
  radA Streptococcus pneumoniae Rx1

48.246

100

0.486
  radA Streptococcus mitis NCTC 12261

48.246

100

0.486
  radA Streptococcus pneumoniae R6

48.246

100

0.486
  radA Streptococcus pneumoniae TIGR4

48.246

100

0.486
  radA Bacillus subtilis subsp. subtilis str. 168

50

94.923

0.475