Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG370_RS09555 Genome accession   NZ_CP107913
Coordinates   2242544..2243188 (-) Length   214 a.a.
NCBI ID   WP_328462552.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00448     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2237544..2248188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - vraR 2242544..2243188 (-) 645 - - Regulator

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 22954.34 Da        Isoelectric Point: 5.3611

>NTDB_id=648852 OG370_RS09555 WP_328462552.1 2242544..2243188(-) (vraR) [Streptomyces sp. NBC_00448]
MADKVIRVLLVDDHQVVRRGLRTFLEVQGDIEVVGEAADGDEGVARALELRPDVILMDVKMPGTDGIEALRLLHEADSPA
RVLIVTSFTEKRTVVPALRAGAAGYVYKDVDPVALADAIRSVHAGHVLLQPEVAGALLAPDQPAPGSGRGNALTEREREV
LGLISDGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRNGIGD

Nucleotide


Download         Length: 645 bp        

>NTDB_id=648852 OG370_RS09555 WP_328462552.1 2242544..2243188(-) (vraR) [Streptomyces sp. NBC_00448]
GTGGCTGACAAGGTGATCCGGGTGCTGCTCGTGGACGACCACCAGGTGGTCCGCCGCGGCCTGCGGACGTTCCTGGAGGT
CCAGGGCGACATCGAGGTGGTCGGCGAGGCCGCCGACGGCGACGAGGGCGTGGCCCGCGCGCTGGAGCTGCGGCCCGACG
TGATCCTGATGGACGTCAAGATGCCCGGCACCGACGGCATCGAGGCGCTGCGGCTGCTGCACGAGGCGGACAGCCCCGCT
CGGGTCCTCATCGTGACCAGCTTCACCGAGAAGCGCACCGTGGTCCCCGCCCTGCGGGCCGGCGCCGCCGGTTACGTCTA
CAAGGACGTCGACCCGGTCGCGCTCGCCGACGCGATCCGCTCGGTGCACGCCGGGCACGTCCTGCTCCAGCCCGAGGTGG
CCGGGGCGCTGCTCGCCCCGGACCAGCCCGCCCCGGGCAGCGGCCGCGGCAACGCGCTGACCGAACGCGAGCGCGAGGTC
CTCGGCCTGATCTCCGACGGCCGCTCCAACCGCGAGATCGCCCGCGCGCTGGTGCTCTCCGAGAAGACCGTGAAGACCCA
CGTGTCGAACATCCTCATGAAGCTGGACCTCGCCGACCGCACCCAGGCGGCGCTGTGGGCGGTCCGCAACGGTATCGGTG
ACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-119)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.928

96.729

0.435
  degU Bacillus subtilis subsp. subtilis str. 168

37.557

100

0.388