Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG370_RS01685 Genome accession   NZ_CP107913
Coordinates   361524..362153 (-) Length   209 a.a.
NCBI ID   WP_328459799.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00448     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 356524..367153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - vraR 361524..362153 (-) 630 - - Regulator

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 22232.58 Da        Isoelectric Point: 5.9436

>NTDB_id=648833 OG370_RS01685 WP_328459799.1 361524..362153(-) (vraR) [Streptomyces sp. NBC_00448]
MTIRLLVADDHPVVRDGLRGVFDGDPDFEVAGEAADGAEAVDRALALGVDVVLMDLRMPRMGGVEAIGLLRERAPAVHVL
VLTTYDSDADVLPAIEAGATGYLLKDAPRDELVRAVRAAHQGHPVLAPTVAQKLIGRVREPATPAGTLTERELEVLRLVA
AGTTNREAARQLFISEATVKTHLLHLYAKLGVRDRAAAVAAAYRTGLLS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=648833 OG370_RS01685 WP_328459799.1 361524..362153(-) (vraR) [Streptomyces sp. NBC_00448]
GTGACCATTCGCCTGCTCGTCGCCGACGACCACCCCGTCGTACGTGACGGCCTGCGCGGTGTCTTCGACGGTGACCCGGA
CTTCGAGGTCGCCGGTGAAGCCGCGGACGGGGCCGAGGCCGTGGACCGGGCGCTCGCGCTCGGCGTGGACGTGGTGCTGA
TGGACCTGCGGATGCCGCGGATGGGCGGCGTCGAGGCGATCGGGCTGCTGCGCGAGCGCGCCCCCGCCGTCCACGTGCTG
GTCCTCACCACGTACGACAGCGACGCCGACGTGCTGCCCGCGATCGAGGCGGGCGCCACCGGCTACCTGCTCAAGGACGC
GCCGCGCGACGAACTCGTCCGTGCCGTGCGCGCCGCCCACCAGGGCCATCCCGTGCTCGCCCCCACCGTCGCGCAGAAGC
TCATCGGCCGGGTCCGCGAACCCGCCACGCCCGCCGGGACGCTCACCGAGCGCGAGCTGGAGGTGCTGCGCCTGGTCGCC
GCGGGCACGACCAACCGGGAGGCGGCCCGGCAGCTGTTCATCAGCGAGGCCACCGTCAAGACGCACCTGCTGCACCTCTA
CGCGAAGCTCGGCGTACGCGACCGCGCCGCCGCGGTCGCCGCCGCCTACCGGACCGGGCTGCTCAGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.713

100

0.397
  degU Bacillus subtilis subsp. subtilis str. 168

36.607

100

0.392