Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG236_RS44090 Genome accession   NZ_CP107910
Coordinates   9603041..9603712 (+) Length   223 a.a.
NCBI ID   WP_266524591.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00453     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 9598041..9608712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG236_RS44060 (OG236_44045) - 9598292..9599353 (+) 1062 WP_328432635.1 Dyp-type peroxidase -
  OG236_RS44065 (OG236_44050) - 9599350..9600162 (+) 813 WP_328432636.1 family 1 encapsulin nanocompartment shell protein -
  OG236_RS44070 (OG236_44055) - 9600258..9600716 (-) 459 WP_266524585.1 SRPBCC family protein -
  OG236_RS44075 (OG236_44060) - 9601055..9601408 (+) 354 WP_266524587.1 VOC family protein -
  OG236_RS44080 (OG236_44065) - 9601703..9601921 (+) 219 WP_266524589.1 hypothetical protein -
  OG236_RS44085 (OG236_44070) - 9601956..9602705 (-) 750 WP_266518740.1 transposase -
  OG236_RS44090 (OG236_44075) dinR/lexA 9603041..9603712 (+) 672 WP_266524591.1 transcriptional repressor LexA Regulator
  OG236_RS44100 (OG236_44085) - 9604513..9604764 (+) 252 Protein_8729 AraC family transcriptional regulator -
  OG236_RS44105 (OG236_44090) - 9605312..9606076 (+) 765 WP_266524593.1 hypothetical protein -
  OG236_RS44110 (OG236_44095) - 9606218..9606928 (-) 711 WP_328432637.1 transposase -
  OG236_RS44115 (OG236_44100) - 9607115..9608389 (+) 1275 WP_327667778.1 MFS transporter -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24278.62 Da        Isoelectric Point: 4.9902

>NTDB_id=648828 OG236_RS44090 WP_266524591.1 9603041..9603712(+) (dinR/lexA) [Streptomyces sp. NBC_00453]
MENTTPARRGRPQGPGTAEGELTGRQAAIVRYITETVDRQGYPPSMREIGKAVDLNSTSSVAYQLLALERKGILYRDPHR
PRAYRVRPSWAPDLDGKAVEQVDVPLVGRIAAGAPLLADEMVEDVYTLPRQVVGDGEVFALTVSGDSMVDAAICDGDIVA
VKRQDSADHGDIVAALLEDEATVKVLRRQDGQVWLMPRNPAYEPIRGDEARILGKVVGVLRVL

Nucleotide


Download         Length: 672 bp        

>NTDB_id=648828 OG236_RS44090 WP_266524591.1 9603041..9603712(+) (dinR/lexA) [Streptomyces sp. NBC_00453]
ATGGAGAACACCACGCCCGCCCGCCGGGGCCGACCTCAAGGCCCCGGCACTGCCGAAGGAGAGCTGACGGGCCGCCAGGC
GGCCATCGTCCGCTACATCACGGAGACGGTCGACCGACAGGGATACCCGCCGTCGATGCGGGAGATCGGCAAGGCCGTAG
ACCTCAACAGCACCTCCTCGGTCGCCTACCAACTGCTCGCGCTCGAGCGCAAAGGCATCCTCTATCGCGACCCGCACCGG
CCTCGCGCCTACCGGGTCAGGCCGTCATGGGCGCCTGACCTCGATGGCAAAGCCGTGGAACAGGTCGATGTGCCGCTCGT
CGGCCGGATCGCCGCCGGCGCGCCCCTGCTCGCCGACGAGATGGTCGAGGACGTCTACACCCTGCCCCGTCAGGTCGTGG
GCGACGGCGAGGTGTTCGCGCTGACGGTGTCCGGCGACAGCATGGTCGACGCGGCGATCTGCGACGGAGACATCGTCGCC
GTCAAACGACAGGACAGCGCCGATCACGGCGACATCGTCGCCGCGCTCCTTGAGGACGAGGCCACTGTCAAAGTACTGCG
CCGGCAGGACGGGCAGGTGTGGCTCATGCCCCGCAATCCGGCCTACGAGCCGATCCGCGGCGACGAGGCGCGGATCCTCG
GCAAGGTCGTCGGCGTTCTCCGCGTTCTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(105-217)

LexA DNA binding domain (LexA_DNA_bind)

(21-83)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.366

91.928

0.417