Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG236_RS41500 Genome accession   NZ_CP107910
Coordinates   9067675..9068343 (+) Length   222 a.a.
NCBI ID   WP_266530450.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00453     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 9062675..9073343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG236_RS41475 (OG236_41460) - 9063156..9063473 (+) 318 Protein_8205 MFS transporter -
  OG236_RS41480 (OG236_41465) - 9063588..9064379 (-) 792 WP_328432508.1 hypothetical protein -
  OG236_RS41485 (OG236_41470) - 9064580..9065527 (+) 948 WP_266592065.1 ATP-binding cassette domain-containing protein -
  OG236_RS41490 (OG236_41475) - 9065524..9066363 (+) 840 WP_267125132.1 ABC transporter permease -
  OG236_RS41495 (OG236_41480) - 9066422..9067678 (+) 1257 WP_267125380.1 sensor histidine kinase -
  OG236_RS41500 (OG236_41485) vraR 9067675..9068343 (+) 669 WP_266530450.1 response regulator transcription factor Regulator
  OG236_RS41505 (OG236_41490) - 9068500..9068748 (+) 249 Protein_8211 hypothetical protein -
  OG236_RS41510 (OG236_41495) - 9068746..9068913 (-) 168 Protein_8212 PAP2 family protein -
  OG236_RS41515 (OG236_41500) - 9068961..9070775 (-) 1815 WP_328432509.1 MOSC and FAD-binding oxidoreductase domain-containing protein -
  OG236_RS41520 (OG236_41505) - 9070772..9071641 (-) 870 WP_327692023.1 DUF427 domain-containing protein -
  OG236_RS41525 (OG236_41510) - 9071740..9072606 (-) 867 WP_266530456.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23874.25 Da        Isoelectric Point: 5.7337

>NTDB_id=648826 OG236_RS41500 WP_266530450.1 9067675..9068343(+) (vraR) [Streptomyces sp. NBC_00453]
MTTVLVVDDQPLQRYGFRVLLDSIPETEVVGEAAHGAEAVRKTAELRPDVVLMDVRMPGMDGIEATRRITAAGGRSRVLV
LTTFDVDEYVHAALRAGASGFLLKDARPEELLAGIRAVAAGDAVIAPALTRRILDEYAEHVSAGRSDASEDPRLTSLTDR
EREILVAIGKGWTNGEIAARFVVSESTVKTHVGRVLAKIGARDRIQAVIFAYDFGLARPGTG

Nucleotide


Download         Length: 669 bp        

>NTDB_id=648826 OG236_RS41500 WP_266530450.1 9067675..9068343(+) (vraR) [Streptomyces sp. NBC_00453]
GTGACCACGGTGCTCGTCGTGGACGACCAGCCGCTGCAGCGCTACGGCTTCCGGGTGCTGCTCGACTCCATCCCCGAGAC
GGAGGTGGTCGGCGAGGCCGCGCACGGCGCCGAGGCCGTCCGCAAGACCGCCGAACTGCGCCCCGACGTCGTCCTGATGG
ACGTACGGATGCCGGGTATGGACGGCATCGAGGCGACGCGCCGGATCACCGCCGCCGGCGGCCGCTCCCGTGTCCTCGTA
CTGACCACGTTCGACGTCGACGAATACGTGCACGCCGCCCTGCGCGCCGGAGCCAGCGGCTTCCTCCTGAAGGACGCGCG
CCCCGAGGAACTCCTCGCCGGGATCCGCGCGGTCGCCGCGGGCGACGCCGTCATCGCACCGGCGCTCACCCGCCGCATCC
TGGACGAGTACGCCGAGCACGTGTCCGCCGGCCGGAGCGACGCGAGCGAGGACCCGCGGCTGACCTCCCTCACCGACCGC
GAGCGTGAGATCCTCGTCGCCATCGGCAAGGGCTGGACCAACGGCGAGATCGCGGCCCGCTTCGTCGTGTCCGAGTCCAC
CGTGAAGACCCACGTCGGCCGGGTCCTGGCCAAGATCGGCGCCCGCGACCGCATCCAGGCCGTGATCTTCGCCTACGACT
TCGGACTGGCCCGACCGGGCACCGGATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-211)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.14

96.847

0.369