Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   L2Z53_RS00225 Genome accession   NZ_CP091281
Coordinates   45463..47088 (-) Length   541 a.a.
NCBI ID   WP_236366105.1    Uniprot ID   -
Organism   Macrococcoides canis strain B8     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 40463..52088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z53_RS00190 (L2Z53_00190) - 40647..41159 (-) 513 WP_236366099.1 hypothetical protein -
  L2Z53_RS00195 (L2Z53_00195) - 41389..41871 (-) 483 WP_133353681.1 hypothetical protein -
  L2Z53_RS00200 (L2Z53_00200) - 41877..42722 (-) 846 WP_236366100.1 hypothetical protein -
  L2Z53_RS00205 (L2Z53_00205) - 42940..43329 (-) 390 WP_236366101.1 RadC family protein -
  L2Z53_RS00210 (L2Z53_00210) - 43405..43908 (-) 504 WP_236366102.1 DUF1643 domain-containing protein -
  L2Z53_RS00215 (L2Z53_00215) - 43927..44253 (-) 327 WP_236366103.1 DUF960 family protein -
  L2Z53_RS00220 (L2Z53_00220) - 44317..44676 (-) 360 WP_236366104.1 SAUGI family uracil-DNA glycosylase inhibitor -
  L2Z53_RS00225 (L2Z53_00225) ccrB 45463..47088 (-) 1626 WP_236366105.1 recombinase family protein Machinery gene
  L2Z53_RS00230 (L2Z53_00230) - 47091..48458 (-) 1368 WP_236366106.1 recombinase family protein -
  L2Z53_RS00235 (L2Z53_00235) - 48671..50227 (-) 1557 WP_236366107.1 phage/plasmid primase, P4 family -
  L2Z53_RS00240 (L2Z53_00240) - 50220..50783 (-) 564 WP_236366108.1 hypothetical protein -
  L2Z53_RS00245 (L2Z53_00245) - 50770..52017 (-) 1248 WP_236366109.1 DNA polymerase -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 61764.88 Da        Isoelectric Point: 9.4157

>NTDB_id=648813 L2Z53_RS00225 WP_236366105.1 45463..47088(-) (ccrB) [Macrococcoides canis strain B8]
MNKKAAIYARVSTVSQAEEGFSIDGQIALLKDICAKNNYDVYDIYVDRGISGKNMNRPALVQMNEDARNGKFDIIMVYKA
NRLARNTSDLLKMVEEYQKYNLEFISYSEKFDTTNAAGKLMLQIMASMAEYERNQIVENVILGQSKRARNGYYNGNSLLG
YDKIPNDKKHLSVNESEAEIVRRIFNEYSNGKGYRAIANGLNKDGHRTKKGNPFDIAGVKYILNNVFYIGQIKFQQYIGW
NEKRRKGYNPNPIIAEGKHEPIIEKDLWDKVHRRMSEMSKKPQVHGKGTNVLTGLIRCPVCGHAHAAANTVNTVKGEKKK
IRYYSCSQFKNKGAAVCSANSVRADLIEPYVMNRIIEVINNDKILDKVVEKANERLQEQPIQIDRNINIKKAELDELQTK
LNNLTVALASSPDLAPVLKDSINEYQENISKIENEILLLTEKLKNEFIPTISVDEVKAALEAIFKDVERLEKHQLKALYL
SVIKEIHFRKHKEPGKKYEFFITLKITPEVLKEVFNDKQPEEAPLSASSLFLSNNILYLEI

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=648813 L2Z53_RS00225 WP_236366105.1 45463..47088(-) (ccrB) [Macrococcoides canis strain B8]
ATGAATAAAAAAGCAGCGATCTACGCAAGGGTATCAACAGTATCTCAAGCTGAAGAAGGATTTAGTATTGATGGACAGAT
CGCATTATTAAAAGACATATGTGCTAAAAATAATTACGACGTTTATGATATTTATGTCGATAGAGGTATTAGTGGTAAGA
ATATGAATCGGCCAGCACTTGTACAAATGAATGAAGATGCAAGAAACGGGAAGTTCGATATTATCATGGTTTATAAAGCT
AACCGTTTAGCACGTAACACATCAGATTTATTAAAAATGGTTGAAGAATACCAAAAGTATAATCTCGAATTCATTAGCTA
TTCGGAAAAATTTGACACTACAAATGCTGCCGGTAAGTTAATGTTACAAATAATGGCAAGCATGGCAGAATATGAACGTA
ATCAAATTGTAGAGAACGTGATTTTAGGTCAATCGAAGCGAGCGAGAAATGGTTATTATAATGGGAATAGTTTATTGGGT
TATGACAAGATACCTAACGATAAGAAGCACTTATCAGTCAATGAATCAGAAGCTGAAATTGTTAGACGTATATTCAATGA
ATATTCTAATGGTAAAGGTTATCGTGCAATTGCGAATGGTCTAAACAAAGATGGTCATAGAACAAAGAAAGGTAATCCAT
TCGATATTGCTGGTGTGAAGTATATCCTTAATAATGTATTTTATATCGGTCAAATCAAGTTCCAACAATACATCGGGTGG
AATGAGAAGAGACGTAAAGGCTATAATCCTAATCCTATTATCGCAGAAGGTAAGCACGAACCAATCATTGAAAAAGATCT
GTGGGATAAAGTTCATCGCCGTATGTCTGAAATGAGCAAGAAGCCTCAAGTTCATGGCAAAGGGACAAATGTATTAACTG
GCTTGATCCGATGCCCCGTCTGCGGCCATGCACATGCTGCAGCCAATACCGTCAACACGGTAAAGGGTGAGAAGAAAAAG
ATTCGTTATTACTCATGTAGTCAATTTAAAAATAAAGGTGCTGCTGTATGTTCAGCAAATTCGGTACGAGCTGATCTTAT
AGAACCTTACGTCATGAATAGAATCATCGAAGTAATTAACAATGATAAAATTCTGGATAAAGTAGTTGAAAAAGCGAATG
AACGACTCCAAGAACAACCAATACAGATAGATCGTAACATCAACATCAAAAAAGCTGAACTGGACGAATTACAAACAAAG
CTGAACAATTTAACTGTAGCTTTAGCATCTTCGCCTGACTTAGCTCCCGTACTTAAAGACAGTATCAATGAATATCAGGA
AAACATCTCAAAAATCGAGAATGAGATACTATTACTCACTGAAAAACTTAAAAACGAGTTTATACCCACTATATCAGTTG
ATGAAGTTAAGGCAGCACTGGAAGCTATTTTCAAAGACGTAGAACGTTTGGAGAAGCATCAACTTAAAGCTCTATACTTA
TCAGTCATTAAAGAAATTCACTTTAGAAAACACAAAGAACCTGGAAAGAAATATGAATTCTTCATAACACTCAAGATCAC
ACCGGAAGTCTTAAAAGAAGTATTCAATGATAAACAACCAGAGGAAGCGCCACTCAGCGCTTCCTCTTTATTTTTGTCTA
ATAACATACTATATCTAGAGATATGA

Domains

Predicted by InterproScan.

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(291-355)

Recombinase (Recombinase)

(176-277)

Resolvase, N terminal domain (Resolvase)

(5-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

53.519

99.815

0.534