Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimV   Type   Machinery gene
Locus tag   L2Y54_RS21880 Genome accession   NZ_CP091244
Coordinates   2227806..2227910 (+) Length   34 a.a.
NCBI ID   WP_414718473.1    Uniprot ID   -
Organism   Thiothrix winogradskyi strain CT3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2222806..2232910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Y54_RS11330 (L2Y54_11330) - 2223544..2224566 (+) 1023 WP_236496222.1 aspartate-semialdehyde dehydrogenase -
  L2Y54_RS21875 - 2225448..2225546 (+) 99 Protein_2250 hypothetical protein -
  L2Y54_RS21880 fimV 2227806..2227910 (+) 105 WP_414718473.1 FimV/HubP family polar landmark protein Machinery gene
  L2Y54_RS11340 (L2Y54_11340) truA 2227986..2228768 (+) 783 WP_236496224.1 tRNA pseudouridine(38-40) synthase TruA -
  L2Y54_RS11345 (L2Y54_11345) - 2228867..2229178 (+) 312 WP_236496225.1 RDD family protein -
  L2Y54_RS11350 (L2Y54_11350) - 2229266..2230444 (+) 1179 WP_236496226.1 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase -
  L2Y54_RS11355 (L2Y54_11355) - 2230472..2231377 (+) 906 WP_236496227.1 alpha/beta hydrolase -
  L2Y54_RS11360 (L2Y54_11360) - 2231378..2231950 (-) 573 WP_236496228.1 hypothetical protein -
  L2Y54_RS11365 (L2Y54_11365) - 2232086..2232421 (+) 336 WP_236496229.1 UPF0175 family protein -
  L2Y54_RS11370 (L2Y54_11370) - 2232409..2232876 (+) 468 WP_236496230.1 DUF3368 domain-containing protein -

Sequence

Protein


Download         Length: 34 a.a.        Molecular weight: 3786.12 Da        Isoelectric Point: 3.9915

>NTDB_id=648804 L2Y54_RS21880 WP_414718473.1 2227806..2227910(+) (fimV) [Thiothrix winogradskyi strain CT3]
MGDIEGARSTLEEVMVEGNDDQRREAEVLLHQTG

Nucleotide


Download         Length: 105 bp        

>NTDB_id=648804 L2Y54_RS21880 WP_414718473.1 2227806..2227910(+) (fimV) [Thiothrix winogradskyi strain CT3]
ATGGGCGACATCGAAGGCGCTCGGAGTACCTTGGAAGAGGTCATGGTCGAAGGCAACGACGATCAGCGCCGTGAAGCCGA
AGTATTGCTGCACCAGACAGGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimV Pseudomonas aeruginosa PAK

59.375

94.118

0.559