Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG236_RS29930 Genome accession   NZ_CP107910
Coordinates   6499108..6499722 (+) Length   204 a.a.
NCBI ID   WP_266521082.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00453     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6494108..6504722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG236_RS29915 (OG236_29925) - 6496261..6497187 (+) 927 WP_266926190.1 ABC transporter ATP-binding protein -
  OG236_RS29920 (OG236_29930) - 6497184..6497915 (+) 732 WP_266926192.1 ABC transporter permease -
  OG236_RS29925 (OG236_29935) - 6497921..6499111 (+) 1191 WP_266844854.1 histidine kinase -
  OG236_RS29930 (OG236_29940) vraR 6499108..6499722 (+) 615 WP_266521082.1 response regulator transcription factor Regulator
  OG236_RS29935 (OG236_29945) - 6499736..6500587 (-) 852 WP_328432066.1 transglutaminase-like domain-containing protein -
  OG236_RS29940 (OG236_29950) - 6500620..6501627 (-) 1008 WP_266589752.1 GNAT family N-acetyltransferase -
  OG236_RS29945 (OG236_29955) fdxA 6501768..6502088 (+) 321 WP_030929316.1 ferredoxin -
  OG236_RS29950 (OG236_29960) - 6502208..6503323 (+) 1116 WP_266589754.1 bifunctional succinyldiaminopimelate transaminase/glutamate-prephenate aminotransferase -
  OG236_RS29955 (OG236_29965) - 6503407..6503865 (-) 459 WP_266521092.1 ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 21458.69 Da        Isoelectric Point: 4.7098

>NTDB_id=648804 OG236_RS29930 WP_266521082.1 6499108..6499722(+) (vraR) [Streptomyces sp. NBC_00453]
MSPTIKVLLAEDQSMVREALAALLGLEDDIEVVAQVARGDEVVAAAREYDVDVALLDIEMPGCTGIEAAALVHKELPAVK
VVVLTTFGRPGYLRSAMEAGADAFLVKDAPAAQLAEAVRKVLAGERVIDPTLAAAALAGGANPLTDREREILRAAADGST
NAELAAALHLSQGTVRNYLSTAIQKLAVRNRAEAVRIAREKGWL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=648804 OG236_RS29930 WP_266521082.1 6499108..6499722(+) (vraR) [Streptomyces sp. NBC_00453]
ATGAGCCCTACGATCAAGGTTCTGCTCGCCGAGGACCAGTCGATGGTCCGCGAGGCGCTGGCCGCCCTCCTCGGTCTTGA
GGACGACATCGAGGTCGTCGCCCAAGTGGCGCGCGGCGACGAGGTGGTGGCGGCCGCCCGCGAGTACGACGTGGATGTGG
CCCTCCTCGACATCGAGATGCCGGGCTGCACCGGTATCGAGGCGGCGGCCCTGGTCCACAAGGAACTCCCGGCGGTGAAG
GTGGTCGTCCTCACCACCTTCGGCCGTCCCGGCTACCTCCGCAGCGCCATGGAAGCGGGCGCCGACGCCTTCCTGGTCAA
GGACGCCCCGGCCGCCCAACTGGCAGAGGCGGTACGCAAGGTGCTGGCGGGAGAACGGGTCATCGACCCCACCCTCGCCG
CCGCGGCCCTGGCAGGGGGCGCGAACCCGCTGACCGACCGCGAACGGGAGATCCTGCGCGCGGCGGCCGACGGATCCACC
AACGCGGAACTGGCCGCGGCGCTGCATCTGTCGCAGGGCACGGTCCGCAACTACCTCTCGACGGCGATCCAGAAACTGGC
GGTACGCAACAGGGCCGAGGCGGTACGCATCGCGAGGGAAAAGGGCTGGCTCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(143-198)

Response regulator receiver domain (Response_reg)

(7-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.715

100

0.373