Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   L2Y54_RS20455 Genome accession   NZ_CP091244
Coordinates   4124548..4125549 (+) Length   333 a.a.
NCBI ID   WP_236498662.1    Uniprot ID   -
Organism   Thiothrix winogradskyi strain CT3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4119548..4130549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Y54_RS20435 (L2Y54_20435) - 4120548..4121075 (-) 528 WP_236498655.1 C40 family peptidase -
  L2Y54_RS20440 (L2Y54_20440) rsmD 4121226..4121774 (-) 549 WP_236498656.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  L2Y54_RS20445 (L2Y54_20445) - 4121764..4123077 (-) 1314 WP_236498657.1 M16 family metallopeptidase -
  L2Y54_RS20450 (L2Y54_20450) - 4123082..4124422 (-) 1341 WP_236498659.1 M16 family metallopeptidase -
  L2Y54_RS20455 (L2Y54_20455) pilA 4124548..4125549 (+) 1002 WP_236498662.1 signal recognition particle-docking protein FtsY Machinery gene
  L2Y54_RS20460 (L2Y54_20460) ftsE 4125555..4126199 (+) 645 WP_236498664.1 cell division ATP-binding protein FtsE -
  L2Y54_RS20465 (L2Y54_20465) ftsX 4126199..4127188 (+) 990 WP_236498666.1 permease-like cell division protein FtsX -
  L2Y54_RS20470 (L2Y54_20470) - 4127305..4127523 (+) 219 WP_236498668.1 hypothetical protein -
  L2Y54_RS20475 (L2Y54_20475) - 4127530..4129245 (-) 1716 WP_236498670.1 ABC transporter ATP-binding protein -
  L2Y54_RS20480 (L2Y54_20480) - 4129242..4130432 (-) 1191 WP_236498672.1 ABC transporter permease -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35884.37 Da        Isoelectric Point: 6.0600

>NTDB_id=648799 L2Y54_RS20455 WP_236498662.1 4124548..4125549(+) (pilA) [Thiothrix winogradskyi strain CT3]
MFGFGKKKKPELPDATTVVPQAPAPAEGLFARLKRGLSKTSHALTEGMETLVVGKKQIDDDVLEELETRLLTADVGMEAT
REIMSDLTSRVKRAELADMDALMQALYNKMHRILRPAAQPLEIDGSHQPFVLLMVGINGAGKTTTIGKLAKKFQQDGKSV
MLAAGDTFRAAAVEQLTVWGERNNIPVIAQGSGADSASVIFDAFQAAKARKIDVLLADTAGRLHTQTNLMDELKKVKRVI
QKFDGTAPHEIMLIVDASIGQNALVQAKQFNEALGLTGITVTKLDGTAKGGILFAIAQQLNIPVRFIGVGESIDDLQEFD
AYEFTSALLAGND

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=648799 L2Y54_RS20455 WP_236498662.1 4124548..4125549(+) (pilA) [Thiothrix winogradskyi strain CT3]
ATGTTTGGATTCGGAAAGAAAAAAAAGCCGGAATTACCTGATGCCACCACGGTAGTTCCTCAAGCCCCTGCCCCAGCGGA
AGGTTTGTTTGCGCGGTTAAAGCGCGGTCTGTCAAAAACCAGCCATGCCCTTACCGAGGGAATGGAAACGCTGGTGGTTG
GCAAAAAGCAAATCGACGACGATGTGCTGGAGGAGCTGGAAACGCGCTTACTTACCGCCGACGTCGGCATGGAAGCGACC
CGCGAAATCATGAGCGACCTTACCAGCCGCGTGAAACGCGCGGAACTTGCGGATATGGATGCGCTGATGCAAGCGCTCTA
CAATAAAATGCACCGCATTCTGCGCCCTGCCGCACAACCCTTGGAAATCGACGGCTCACACCAGCCCTTTGTGTTGCTCA
TGGTCGGCATCAATGGCGCGGGTAAAACCACCACGATTGGCAAACTGGCGAAAAAATTCCAACAAGACGGCAAATCGGTG
ATGTTAGCGGCGGGTGACACTTTCCGTGCTGCCGCCGTGGAGCAGCTCACCGTCTGGGGCGAACGCAATAATATTCCGGT
GATTGCGCAAGGCAGTGGTGCGGATTCCGCGTCGGTGATTTTCGATGCGTTTCAAGCCGCCAAAGCGCGTAAAATCGACG
TATTGCTGGCGGATACTGCCGGACGCTTGCACACTCAAACCAATTTGATGGATGAGCTGAAAAAGGTCAAACGGGTTATT
CAGAAATTCGACGGCACTGCACCGCATGAAATCATGCTGATTGTGGATGCCAGCATTGGTCAAAATGCTTTGGTACAAGC
CAAACAATTCAACGAAGCATTGGGGCTGACGGGAATCACCGTCACAAAACTGGACGGAACTGCCAAAGGCGGGATTCTGT
TCGCGATTGCCCAACAACTTAACATTCCGGTACGCTTTATTGGCGTGGGTGAAAGCATCGACGACTTGCAAGAATTTGAT
GCGTATGAATTCACCAGCGCCCTGCTCGCCGGAAACGACTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(129-329)

SRP54-type protein, helical bundle domain (SRP54_N)

(44-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

58.278

90.691

0.529