Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L2Y54_RS09155 Genome accession   NZ_CP091244
Coordinates   1799869..1801233 (-) Length   454 a.a.
NCBI ID   WP_236501542.1    Uniprot ID   -
Organism   Thiothrix winogradskyi strain CT3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1794869..1806233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Y54_RS09135 (L2Y54_09135) argJ 1795703..1796911 (+) 1209 WP_236501538.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  L2Y54_RS09140 (L2Y54_09140) - 1796892..1797845 (+) 954 WP_236501539.1 Nudix family hydrolase -
  L2Y54_RS09145 (L2Y54_09145) - 1797834..1798037 (-) 204 WP_236501540.1 YdcH family protein -
  L2Y54_RS09150 (L2Y54_09150) - 1798050..1799669 (-) 1620 WP_236501541.1 DEAD/DEAH box helicase -
  L2Y54_RS09155 (L2Y54_09155) radA 1799869..1801233 (-) 1365 WP_236501542.1 DNA repair protein RadA Machinery gene
  L2Y54_RS09160 (L2Y54_09160) - 1801226..1802515 (-) 1290 WP_236501543.1 HlyC/CorC family transporter -
  L2Y54_RS09165 (L2Y54_09165) - 1802518..1803321 (-) 804 WP_236501545.1 inner membrane protein YpjD -
  L2Y54_RS09170 (L2Y54_09170) ffh 1803454..1804839 (+) 1386 WP_236501546.1 signal recognition particle protein -
  L2Y54_RS09175 (L2Y54_09175) - 1805037..1805300 (+) 264 WP_236501547.1 hypothetical protein -
  L2Y54_RS09180 (L2Y54_09180) - 1805644..1806018 (+) 375 WP_236501548.1 hypothetical protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48829.53 Da        Isoelectric Point: 8.3660

>NTDB_id=648793 L2Y54_RS09155 WP_236501542.1 1799869..1801233(-) (radA) [Thiothrix winogradskyi strain CT3]
MSKAKLQYHCTACGSLHPKWSGQCGECGAWNTLEESVSLPANKQAANQRAGGYAGETAVIRSLNEVSLSEAPRILTHQPE
LDRVLGGGLVSGSVVLIGGDPGIGKSTILLQTLATLTEMKTLYVTGEESLQQVGLRAKRLGLPSDHLRLLTETCVETILS
LVVQEKPQLMVIDSIQTVFTDSLQAAPGSVSQIRESAAKLVRFAKQTNTAMFLVGHVTKEGTLAGPRVLEHMVDTVLYFE
GDPGGRYRIIRAVKNRFGAVNELGVFAMTEQGLKGVSNPSAIFLSRHEEPVSGSVIMVTREGTRPLMVEVQALVDQSHGA
VPRRVTLGLEQNRLAMLLAVLHRHAGISMFDQDVFINVVGGVKISETAADLSLLLAALSSFRNRPLPADLVVFGEVGLAG
EIRPVPNGEERLREAAKHGFKQAIVAKGNKPRHPIEGMKVVAIARLEKAIEIVM

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=648793 L2Y54_RS09155 WP_236501542.1 1799869..1801233(-) (radA) [Thiothrix winogradskyi strain CT3]
ATGAGTAAGGCAAAGCTCCAGTACCATTGCACCGCCTGCGGCAGCCTGCATCCCAAATGGAGCGGGCAATGCGGTGAGTG
TGGTGCATGGAATACCTTGGAGGAAAGCGTCAGCCTACCGGCAAACAAGCAAGCAGCCAATCAACGGGCGGGAGGCTACG
CGGGTGAAACCGCCGTGATTCGTTCCCTCAACGAAGTCAGTTTAAGCGAAGCGCCCCGCATCCTCACCCACCAACCCGAA
CTCGATCGGGTGCTCGGCGGAGGCTTGGTATCCGGTTCTGTGGTGCTAATCGGTGGCGATCCTGGTATTGGCAAATCCAC
CATTTTGCTGCAAACGCTTGCCACCTTAACCGAGATGAAAACCCTGTACGTGACCGGGGAAGAATCGCTACAACAAGTAG
GCTTACGTGCTAAGCGCCTAGGGCTACCCAGCGACCACTTGCGCTTGCTCACTGAAACCTGTGTGGAAACCATCCTCAGT
TTGGTGGTGCAAGAAAAACCGCAATTGATGGTGATTGATTCCATCCAAACCGTGTTTACGGACAGTCTGCAGGCTGCCCC
CGGTTCGGTCAGCCAAATCCGTGAATCAGCGGCTAAGCTGGTGCGTTTCGCCAAGCAAACCAACACCGCGATGTTTTTGG
TCGGTCATGTCACCAAAGAAGGCACATTGGCAGGGCCGCGTGTCCTCGAACACATGGTTGATACCGTGCTGTATTTTGAA
GGCGACCCGGGCGGACGTTACCGCATTATTCGCGCCGTCAAAAACCGTTTCGGGGCAGTCAACGAACTGGGCGTGTTCGC
CATGACCGAACAAGGCTTGAAAGGCGTCAGCAACCCGTCTGCCATTTTTCTGTCACGCCACGAAGAACCCGTTTCCGGCA
GTGTCATCATGGTCACACGCGAAGGTACACGCCCGCTCATGGTGGAAGTGCAAGCGCTGGTCGATCAAAGCCACGGTGCC
GTTCCGCGCCGCGTGACCTTGGGATTGGAACAAAATCGCCTTGCCATGCTCTTAGCAGTGCTGCATCGGCACGCCGGAAT
CTCAATGTTTGACCAAGACGTATTCATAAATGTTGTCGGTGGTGTTAAGATTTCAGAAACCGCTGCTGATTTATCATTGT
TGTTGGCGGCTCTCTCAAGTTTTCGCAACCGTCCTCTGCCTGCTGATCTGGTGGTTTTCGGAGAAGTTGGGCTGGCAGGC
GAGATTCGCCCGGTTCCAAACGGTGAGGAGCGTTTGCGTGAGGCAGCCAAACACGGTTTTAAACAGGCTATCGTAGCGAA
AGGAAACAAACCACGTCACCCGATTGAGGGCATGAAAGTGGTCGCCATTGCCAGATTGGAGAAAGCGATAGAAATTGTGA
TGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(344-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.609

100

0.482
  radA Streptococcus mitis NCTC 12261

45.934

100

0.46
  radA Streptococcus mitis SK321

45.934

100

0.46
  radA Streptococcus pneumoniae Rx1

47.209

94.714

0.447
  radA Streptococcus pneumoniae D39

47.209

94.714

0.447
  radA Streptococcus pneumoniae R6

47.209

94.714

0.447
  radA Streptococcus pneumoniae TIGR4

47.209

94.714

0.447