Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   L2Y54_RS05095 Genome accession   NZ_CP091244
Coordinates   989218..989697 (+) Length   159 a.a.
NCBI ID   WP_236500541.1    Uniprot ID   -
Organism   Thiothrix winogradskyi strain CT3     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 984218..994697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Y54_RS05065 (L2Y54_05065) - 984604..984987 (+) 384 WP_236500515.1 RidA family protein -
  L2Y54_RS05070 (L2Y54_05070) ppx 984991..986490 (+) 1500 WP_236500519.1 exopolyphosphatase -
  L2Y54_RS05075 (L2Y54_05075) - 986590..986922 (+) 333 WP_236500521.1 rhodanese-like domain-containing protein -
  L2Y54_RS05080 (L2Y54_05080) dsrE2 987011..987475 (+) 465 WP_236500523.1 sulfur carrier protein DsrE2 -
  L2Y54_RS05085 (L2Y54_05085) - 987547..988161 (+) 615 WP_236500526.1 NAD(P)H-dependent oxidoreductase -
  L2Y54_RS05090 (L2Y54_05090) - 988177..989040 (+) 864 WP_236500534.1 metallophosphoesterase -
  L2Y54_RS05095 (L2Y54_05095) pilG 989218..989697 (+) 480 WP_236500541.1 response regulator Regulator
  L2Y54_RS05100 (L2Y54_05100) - 989708..990094 (+) 387 WP_236500542.1 response regulator -
  L2Y54_RS05105 (L2Y54_05105) - 990087..990614 (+) 528 WP_236500545.1 chemotaxis protein CheW -
  L2Y54_RS05110 (L2Y54_05110) - 990614..991753 (+) 1140 WP_236500554.1 methyl-accepting chemotaxis protein -
  L2Y54_RS05115 (L2Y54_05115) - 991767..993587 (+) 1821 WP_236500556.1 hypothetical protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17700.41 Da        Isoelectric Point: 4.5878

>NTDB_id=648787 L2Y54_RS05095 WP_236500541.1 989218..989697(+) (pilG) [Thiothrix winogradskyi strain CT3]
MPDTLNNTLERDLTGLKVVVVDDSKTILRTAEVLLTEQGCWVVTAGDGFESLSKIASFKPDVIFVDIMMPRLDGYQTCAL
IKANRQYRDTPVILLSSKDSIFDMARGRLAGSDKYLTKPFTKDDLLAAIYTHVKLPEAPKPPEAPAETHEMPFIDLIDE

Nucleotide


Download         Length: 480 bp        

>NTDB_id=648787 L2Y54_RS05095 WP_236500541.1 989218..989697(+) (pilG) [Thiothrix winogradskyi strain CT3]
ATGCCTGATACCCTAAACAATACGCTTGAACGCGACCTGACCGGCCTGAAAGTTGTCGTGGTGGATGACAGCAAAACCAT
TCTGCGCACTGCTGAGGTATTACTCACTGAGCAGGGGTGTTGGGTGGTCACTGCCGGTGATGGTTTTGAGTCACTGTCAA
AAATAGCGTCCTTTAAACCGGATGTTATTTTCGTGGATATTATGATGCCACGTTTAGATGGCTATCAAACCTGCGCACTC
ATCAAGGCAAACCGACAGTACCGTGATACCCCGGTTATCCTCTTGTCGAGCAAAGACAGCATTTTTGATATGGCGCGGGG
GCGCTTGGCGGGTTCTGATAAGTACCTGACCAAGCCGTTCACCAAAGACGATTTGCTGGCAGCTATTTATACGCATGTAA
AGTTACCTGAAGCGCCTAAGCCGCCGGAAGCACCAGCAGAAACCCATGAGATGCCCTTCATTGATCTAATTGACGAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(18-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

66.4

78.616

0.522