Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG236_RS19140 Genome accession   NZ_CP107910
Coordinates   4223079..4224077 (-) Length   332 a.a.
NCBI ID   WP_266516034.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00453     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4218079..4229077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG236_RS19120 (OG236_19135) - 4218213..4218413 (-) 201 WP_266516023.1 hypothetical protein -
  OG236_RS19125 (OG236_19140) - 4218544..4220118 (-) 1575 WP_328431673.1 MFS transporter -
  OG236_RS19130 (OG236_19145) - 4220181..4221146 (+) 966 WP_328431674.1 YafY family protein -
  OG236_RS19135 (OG236_19150) - 4221819..4222442 (-) 624 WP_266842155.1 TetR family transcriptional regulator -
  OG236_RS19140 (OG236_19155) rpoS 4223079..4224077 (-) 999 WP_266516034.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG236_RS19145 (OG236_19160) - 4224273..4224791 (+) 519 WP_328431675.1 N-acetyltransferase family protein -
  OG236_RS19150 (OG236_19165) - 4224868..4225659 (-) 792 WP_266516039.1 class III extradiol ring-cleavage dioxygenase -
  OG236_RS19155 (OG236_19170) - 4225799..4226329 (+) 531 WP_266516042.1 MarR family transcriptional regulator -
  OG236_RS19160 (OG236_19175) - 4226438..4227985 (-) 1548 WP_266583856.1 MFS transporter -
  OG236_RS19165 (OG236_19180) - 4228124..4228789 (-) 666 WP_328431676.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37172.96 Da        Isoelectric Point: 5.0564

>NTDB_id=648779 OG236_RS19140 WP_266516034.1 4223079..4224077(-) (rpoS) [Streptomyces sp. NBC_00453]
MATRAVARRKSATGETADAASSVRAHAGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVFARQVLDGDEESKAE
ASREELQALVDDGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEPAEIAAELDTKPERVIDVLDWARDPVSLNMAVDDEGETQF
GDLLEDTSAVSPEQSVLTLLRSEELDHLIGRLDPRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARSTGFEAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=648779 OG236_RS19140 WP_266516034.1 4223079..4224077(-) (rpoS) [Streptomyces sp. NBC_00453]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCACCGGCGAGACGGCCGACGCGGCAAGCAGTGTTCGCGCTCACGC
CGGCGAGATCGCCGACCGTGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGCACGCCGCTGCTCGACGCTGCCAAGG
AGGTCGAGCTGTCACAGATCATCGAGGCGGGTGTGTTCGCGCGACAGGTCCTCGACGGAGACGAGGAGTCCAAGGCCGAG
GCCTCCCGCGAGGAGCTTCAGGCCCTGGTCGACGACGGCGAGCGGGCGAAGGACGTCTTCATCCGCTCCAACCTCCGCCT
GGTCGTGGCCGTGGCCCGGCGCTACCCGCGCAGCGGCCTCCCCCTCCTCGACCTGATCCAGGAGGGCAACGCCGGACTGG
TGCGCGCAGTCGAGAAGTTCGACTACGCCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGTCAGGCGATC
ACCCGCTCGATAGCGGACCAGTCGCGCACCATCCGCCTGCCCGTCCACCTGGTGGAGGAGCTGGGCCGGATCCGCCGTGT
GCAGCGCGAGTTCAACCGCGAGCACGGCCGCGACCCGGAGCCCGCGGAGATCGCCGCGGAGCTCGACACGAAGCCGGAGC
GCGTGATCGACGTCCTGGACTGGGCCCGCGACCCGGTCTCCCTGAACATGGCCGTGGACGACGAGGGCGAGACCCAGTTC
GGTGACCTGCTGGAGGACACCTCGGCGGTCTCCCCGGAGCAGTCCGTCCTGACCCTGCTGCGCAGCGAGGAGCTCGACCA
CCTCATCGGCCGCCTCGACCCGCGCACGGCCTCCATCATCAAGATGCGCTACGGCATCGACGACGGCCGCGAGCGCACCC
TGACGGAGGTCGGCAAGGAACACGGCCTGACCCGCGAGCGCATCCGCCAGATCGAGAAGCACGCCCTGCTGGAGCTGAAG
AAGCTGGCCCGGTCCACGGGCTTCGAGGCGGCGGCCTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(179-255)

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70, region 4 (Sigma70_r4)

(269-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.134

90.06

0.361