Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG236_RS14705 Genome accession   NZ_CP107910
Coordinates   3220982..3222913 (+) Length   643 a.a.
NCBI ID   WP_328431433.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00453     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3215982..3227913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG236_RS14690 (OG236_14705) - 3217301..3217606 (+) 306 WP_266513874.1 YtxH domain-containing protein -
  OG236_RS14695 (OG236_14710) - 3217691..3219133 (+) 1443 WP_328431432.1 FGGY family carbohydrate kinase -
  OG236_RS14700 (OG236_14715) rcrP 3219249..3220982 (+) 1734 WP_266513880.1 ABC transporter ATP-binding protein Regulator
  OG236_RS14705 (OG236_14720) rcrQ 3220982..3222913 (+) 1932 WP_328431433.1 ABC transporter ATP-binding protein Regulator
  OG236_RS14710 (OG236_14725) - 3222968..3224269 (-) 1302 WP_266513885.1 RNA polymerase sigma factor -
  OG236_RS14715 (OG236_14730) dnaG 3224773..3226671 (-) 1899 WP_328431434.1 DNA primase -

Sequence

Protein


Download         Length: 643 a.a.        Molecular weight: 69629.04 Da        Isoelectric Point: 6.2655

>NTDB_id=648770 OG236_RS14705 WP_328431433.1 3220982..3222913(+) (rcrQ) [Streptomyces sp. NBC_00453]
MAGPMARMMGQGGGPDSRSLDFKVSGRRLIARFKPERLTIYALLVCVVVSVGLNVIGPKILGRATDLVFAGIIGRQMPAG
ATKEQVLASMRERGQGQVADMLRSTDFTPGKGIDFGAVGNVLLIALCTFLAAGLLMAVATRLVNRAVNRTMYRMREDVQA
KLSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSVLTVIGVLAVMFWVSWLLALVALVTVPLSFVVATRVG
KRSQPHFVQQWRSTGKLNAHVEEMYTGHTLVKVFGRQEESAQQFAEQNDALYEAGFKAQFNSGVMQPLMMFVSNLNYVLV
AVVGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADPVRGERPAELRGLVEL
DNISFSYDPDKPLIEHLSLKAEPGHTVAIVGPTGAGKTTLVNLLMRFYDVSGGRITLDGVDIASMSRDELRAGIGMVLQD
TWLFGGTIAENIAYGASREVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPTILVLD
EATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGTHADLLAADGAYGRLYKAQFAQAVA
EVD

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=648770 OG236_RS14705 WP_328431433.1 3220982..3222913(+) (rcrQ) [Streptomyces sp. NBC_00453]
ATGGCCGGGCCGATGGCGCGGATGATGGGCCAGGGCGGCGGCCCCGACAGCCGTTCGTTGGACTTCAAGGTGTCGGGCAG
GCGCCTGATCGCCCGGTTCAAACCGGAACGTCTCACGATCTACGCGCTGCTGGTCTGCGTGGTGGTGAGCGTCGGCCTGA
ACGTGATCGGGCCGAAGATCCTCGGCAGGGCCACCGACCTCGTCTTCGCCGGCATCATCGGGCGTCAGATGCCGGCCGGG
GCCACCAAGGAACAGGTTCTCGCGTCGATGCGGGAGCGGGGGCAGGGCCAGGTCGCCGACATGCTCCGCAGCACCGACTT
CACGCCCGGCAAGGGCATCGACTTCGGCGCCGTGGGCAACGTACTGCTGATCGCGCTGTGTACGTTCCTCGCCGCCGGTC
TGCTGATGGCGGTGGCGACGCGGCTGGTGAACCGGGCCGTCAACCGGACCATGTACCGGATGCGTGAGGACGTGCAGGCG
AAGCTGTCGCGGCTGCCGTTGTCGTACTTCGACAAACGACAGCGCGGTGAGGTGCTGTCCCGGGCGACGAACGACATCGA
CAACATCGGCCAGACACTGCAGCAGTCGATGGGCCAGCTCATCAACTCGGTGCTGACCGTCATCGGCGTACTCGCGGTGA
TGTTCTGGGTGTCCTGGCTGCTGGCGCTGGTCGCGCTGGTGACGGTGCCGCTGTCGTTCGTCGTCGCCACGCGCGTCGGC
AAGCGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGCTCCACCGGCAAGCTGAACGCCCACGTCGAGGAGATGTACACCGG
CCACACGCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGCAGCAGTTCGCCGAGCAGAACGACGCGCTGTACGAGG
CCGGGTTCAAGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTCAACTACGTGCTGGTG
GCGGTCGTCGGTGGTCTGCGGGTCGCGTCCGGCGCGCTGTCGATCGGTGACGTACAGGCCTTCATCCAGTACTCGCGGCA
GTTCTCGATGCCGCTGACACAGGTTGCCTCGATGGCGAACCTGGTGCAGTCGGGCGTCGCCTCGGCCGAGCGGATCTTCG
AACTCCTGGACGCGGAGGAGCAGGAGGCGGATCCGGTGCGCGGCGAGCGGCCCGCGGAGCTGCGGGGGCTGGTGGAGCTG
GACAACATCTCCTTCAGCTACGACCCCGACAAGCCGCTGATCGAGCACCTGTCCCTGAAGGCGGAACCCGGGCACACCGT
CGCGATCGTCGGCCCGACGGGAGCCGGCAAGACCACGCTGGTCAATCTGCTCATGCGGTTCTACGACGTGTCCGGCGGGC
GTATCACTCTCGACGGCGTCGACATCGCGAGCATGTCCCGGGACGAACTGCGGGCCGGGATCGGCATGGTGCTGCAGGAC
ACCTGGCTGTTCGGCGGCACGATCGCGGAGAACATCGCGTACGGCGCCTCGCGGGAGGTCACCCGGGGCGAGATCGAGGA
GGCGGCGCGGGCCGCGCACGCCGACCGGTTCGTGCGCACGCTTCCCGACGGCTACGACACCGTGATCGACGACGAGGGCT
CGGGCGTCAGCGCCGGTGAGAAGCAGCTCATCACCATCGCGCGGGCGTTCCTTTCGGACCCGACGATCCTGGTGCTCGAC
GAGGCGACGAGTTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTGGCGCACGGCAGGACGTC
GTTCGTGATCGCGCACCGGCTGTCGACCATCCGGGACGCGGACACGATCCTCGTCATGGAGAACGGGTCGATCGTGGAAC
AGGGCACCCACGCGGACCTGTTGGCGGCCGACGGGGCGTACGGGCGGCTGTACAAGGCGCAGTTCGCCCAGGCGGTGGCC
GAGGTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(415-564)

ABC transporter transmembrane region (ABC_membrane)

(43-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.871

92.846

0.379