Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG236_RS14700 Genome accession   NZ_CP107910
Coordinates   3219249..3220982 (+) Length   577 a.a.
NCBI ID   WP_266513880.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00453     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3214249..3225982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG236_RS14660 - 3214364..3214672 (+) 309 WP_328431429.1 hypothetical protein -
  OG236_RS14665 (OG236_14680) - 3214672..3215244 (+) 573 WP_328431430.1 GNAT family N-acetyltransferase -
  OG236_RS14670 (OG236_14685) - 3215539..3216321 (+) 783 WP_328431431.1 sulfite exporter TauE/SafE family protein -
  OG236_RS14690 (OG236_14705) - 3217301..3217606 (+) 306 WP_266513874.1 YtxH domain-containing protein -
  OG236_RS14695 (OG236_14710) - 3217691..3219133 (+) 1443 WP_328431432.1 FGGY family carbohydrate kinase -
  OG236_RS14700 (OG236_14715) rcrP 3219249..3220982 (+) 1734 WP_266513880.1 ABC transporter ATP-binding protein Regulator
  OG236_RS14705 (OG236_14720) rcrQ 3220982..3222913 (+) 1932 WP_328431433.1 ABC transporter ATP-binding protein Regulator
  OG236_RS14710 (OG236_14725) - 3222968..3224269 (-) 1302 WP_266513885.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62487.90 Da        Isoelectric Point: 6.9037

>NTDB_id=648769 OG236_RS14700 WP_266513880.1 3219249..3220982(+) (rcrP) [Streptomyces sp. NBC_00453]
MLIRLLRTYLRPYKKPIALLVLLQLLQTCATLYLPTLNAHIIDQGVVKGDTGYILSFGALMIGISLVQVVCNIGAVYYGA
RTASALGRDLRASVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIVLALGLDVPLSGV
LIAVVPTLGICVTLIVRKLRPLFRAMQVRLDTVNRVLREQITGNRVIRAFVREEYEKDRFRKSNADLTEMQLKTGNLLAL
MFPVVMTTVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLGTSSSVVP
PAAPVTELRRHGHLEIRGAGFRYPGAEEPVLKAVDLVARPGEVTAVIGSTGSGKSTLLGLVPRLFDATDGQVLVDGTDVA
SLEPALLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKDFVQKLEAGLNAPISQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAQETAEATVVIVAQRVATIREADRIVVLDEGLVVGTGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=648769 OG236_RS14700 WP_266513880.1 3219249..3220982(+) (rcrP) [Streptomyces sp. NBC_00453]
GTGCTCATACGACTTCTGCGGACCTACCTCAGGCCCTACAAGAAACCCATCGCCCTGCTGGTGCTGCTGCAGCTCCTGCA
GACCTGCGCCACCCTCTATCTGCCCACTCTGAACGCCCACATCATCGACCAAGGCGTCGTGAAGGGTGACACCGGCTACA
TCCTCTCCTTCGGCGCCCTGATGATCGGCATCTCACTGGTCCAGGTCGTGTGCAACATCGGTGCCGTGTACTACGGCGCC
CGCACCGCCTCCGCACTCGGCCGGGACCTGCGCGCGTCCGTGTTCGACCGGGTGCAGTCCTTCTCGGCGCGGGAGGTCGG
TCACTTCGGCGCGCCCTCGCTGATCACGCGTACGACCAATGACGTGCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCGTGCTGGCGCTCGGCCTGGACGTGCCGCTGTCCGGTGTG
CTGATCGCCGTGGTCCCGACGCTGGGCATCTGCGTCACGCTGATCGTGCGGAAGCTGCGACCGCTGTTCCGGGCCATGCA
GGTACGCCTGGACACGGTCAACCGGGTCCTGCGCGAGCAGATCACCGGCAACCGTGTGATCAGGGCCTTCGTGCGGGAGG
AGTACGAGAAGGACCGGTTCCGCAAGTCCAACGCCGACCTCACCGAGATGCAGCTGAAGACCGGCAACCTGCTCGCGCTG
ATGTTCCCGGTGGTCATGACCACGGTGAACCTGTCGTCGATCGCGGTGGTGTGGTTCGGCGCCCACCGGATCGACAGCGG
CGGGATGCAGATCGGCGACCTGACCGCGTTTCTCGCCTACCTCATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGTGCCGAGCGGATCGAGGAGGTGCTCGGGACCTCCTCCAGCGTGGTGCCG
CCGGCGGCTCCGGTCACCGAGCTGCGCCGGCACGGTCACCTGGAGATCCGGGGTGCCGGGTTCCGCTATCCCGGCGCCGA
GGAGCCCGTGCTCAAGGCGGTCGACCTGGTCGCGCGGCCCGGCGAGGTGACCGCCGTCATCGGCTCGACGGGCAGTGGCA
AGTCGACGCTGCTGGGGCTCGTCCCGCGCCTGTTCGACGCCACCGACGGCCAGGTGCTCGTCGACGGCACGGACGTGGCG
TCCCTCGAACCGGCGCTGCTGGCGAAGACGGTCGGGCTGGTGCCGCAGAAGCCGTACCTGTTCGCCGGGACGGTCGCGAC
CAACCTGCGCTACGGCAATCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGACTTCG
TGCAGAAACTCGAAGCCGGGCTCAACGCCCCGATCTCGCAGGGCGGCACGAACGTCTCCGGCGGTCAGCGGCAGCGACTC
GCCATCGCCCGGACGCTGGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCCACCGA
CGCGGCGCTGCGTGCGGCGCTCGCCCAGGAGACCGCGGAAGCGACCGTCGTGATCGTCGCCCAGCGGGTGGCGACCATCC
GCGAAGCGGACCGGATCGTCGTCCTCGACGAGGGGCTTGTCGTCGGGACCGGCCGCCATCACGAGCTGATGGCGGGCAAC
GAGACCTATCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.554

100

0.388