Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHU74_RS26935 Genome accession   NZ_CP107907
Coordinates   5831535..5832326 (-) Length   263 a.a.
NCBI ID   WP_371618233.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00454     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5826535..5837326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU74_RS26920 (OHU74_26905) - 5826646..5827302 (+) 657 WP_371618230.1 GNAT family N-acetyltransferase -
  OHU74_RS26925 (OHU74_26910) - 5827424..5829364 (+) 1941 WP_371618231.1 IucA/IucC family siderophore biosynthesis protein -
  OHU74_RS26930 (OHU74_26915) - 5829417..5831387 (+) 1971 WP_371618232.1 ATP-dependent DNA helicase -
  OHU74_RS26935 (OHU74_26920) dinR/lexA 5831535..5832326 (-) 792 WP_371618233.1 transcriptional repressor LexA Regulator
  OHU74_RS26940 (OHU74_26925) nrdR 5832815..5833324 (+) 510 WP_371618234.1 transcriptional regulator NrdR -
  OHU74_RS26945 (OHU74_26930) - 5833473..5836370 (+) 2898 WP_371618235.1 vitamin B12-dependent ribonucleotide reductase -
  OHU74_RS26950 (OHU74_26935) - 5836379..5836831 (-) 453 WP_371618236.1 MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 28480.25 Da        Isoelectric Point: 7.3866

>NTDB_id=648726 OHU74_RS26935 WP_371618233.1 5831535..5832326(-) (dinR/lexA) [Streptomyces sp. NBC_00454]
MTTTADSATITAQNRSQSRLEPVHAMNDASLNPEAEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPP
SMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAEE
SVEDVFPLPRQLVGDGELFCLKVVGDSMIEAAICDGDWVTVRRQPVAENGDVVAAMLDGEATVKRFKREDGHVWLLPHNA
AYQPIPGDEATILGKVVAVLRRL

Nucleotide


Download         Length: 792 bp        

>NTDB_id=648726 OHU74_RS26935 WP_371618233.1 5831535..5832326(-) (dinR/lexA) [Streptomyces sp. NBC_00454]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGAACCGCTCCCAGAGCCGACTTGAGCCGGTGCATGCCATGAA
CGACGCAAGCCTGAACCCGGAGGCGGAGCCCGCACGCCCCGCACGCTCGCTGCCAGGGCGACCTCCAGGCATCCGCGCCG
ACAGCTCCGGGCTCACGGACCGGCAGCGGAGGGTCATCGAGGTCATCCGCGACTCGGTGCAGCGGCGGGGCTACCCGCCG
TCGATGCGGGAGATCGGCCAGGCCGTCGGCCTGTCCAGCACGTCGTCGGTCGCACACCAGCTCATGGCCCTGGAGCGCAA
GGGTTTCCTGCGCCGTGACCCGCACCGCCCCCGGGCGTACGAGGTACGCGGCTCCGACCAGCCCAGCTCGCAGCCCACGG
ACACCACCGGGAAGCCCGCGGCCTCGTACGTCCCGCTGGTCGGCCGGATCGCCGCGGGTGGCCCGATCCTCGCCGAGGAG
TCGGTGGAGGACGTGTTCCCGCTCCCGCGCCAGCTGGTGGGTGACGGTGAGCTGTTCTGCCTCAAGGTCGTCGGAGACTC
GATGATCGAGGCCGCGATCTGTGACGGCGACTGGGTCACGGTCCGCCGTCAGCCTGTCGCGGAGAACGGCGACGTCGTCG
CCGCCATGCTCGACGGCGAGGCCACGGTCAAGCGGTTCAAGCGCGAGGACGGCCACGTCTGGCTGCTCCCGCACAACGCC
GCGTACCAGCCGATCCCCGGCGACGAGGCCACCATCCTCGGCAAGGTCGTCGCCGTACTGCGCAGGCTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(56-119)

Peptidase S24-like (Peptidase_S24)

(145-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.19

79.848

0.369