Detailed information NTG0064872

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H7R02_RS05310
• Genome accession: NZ_AP021963
• Coordinates: 1131909..1132901 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain WP3-W18-CRE-03
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1126909..1137901

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H7R02_RS05280 (WP3W18C03_10380)	ispD	1126970..1127680 (+)	711	WP_001539454.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
H7R02_RS05285 (WP3W18C03_10390)	ispF	1127680..1128159 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H7R02_RS05290 (WP3W18C03_10400)	truD	1128156..1129205 (+)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
H7R02_RS05295 (WP3W18C03_10410)	surE	1129186..1129947 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
H7R02_RS05300 (WP3W18C03_10420)	pcm	1129941..1130567 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
H7R02_RS05305 (WP3W18C03_10430)	nlpD	1130752..1131846 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
H7R02_RS05310 (WP3W18C03_10440)	rpoS	1131909..1132901 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H7R02_RS05315 (WP3W18C03_10450)	-	1133079..1133630 (-)	552	WP_001179442.1	flavodoxin family protein	-
H7R02_RS05320 (WP3W18C03_10460)	-	1133855..1134898 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
H7R02_RS05325 (WP3W18C03_10470)	ygbN	1135041..1136405 (-)	1365	WP_000104433.1	GntP family transporter	-
H7R02_RS05330 (WP3W18C03_10480)	ygbM	1136494..1137270 (-)	777	WP_001539449.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=64872 H7R02_RS05310 WP_000081550.1 1131909..1132901(+) (rpoS) [Escherichia coli strain WP3-W18-CRE-03]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=64872 H7R02_RS05310 WP_000081550.1 1131909..1132901(+) (rpoS) [Escherichia coli strain WP3-W18-CRE-03]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715