Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   KW3_RS1000000121475 Genome accession   NZ_AKGH01000001
Coordinates   2573121..2573981 (+) Length   286 a.a.
NCBI ID   WP_001884047.1    Uniprot ID   Q9KNL3
Organism   Vibrio cholerae H1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2568121..2578981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KW3_RS0111680 greB 2568649..2569134 (-) 486 WP_000850496.1 transcription elongation factor GreB -
  KW3_RS0111685 - 2569379..2571700 (+) 2322 WP_000030087.1 Tex family protein -
  KW3_RS0111690 - 2571792..2572262 (-) 471 WP_000961392.1 hypothetical protein -
  KW3_RS0111695 bioH 2572424..2573185 (-) 762 WP_001240449.1 pimeloyl-ACP methyl ester esterase BioH -
  KW3_RS1000000121475 comF 2573121..2573981 (+) 861 WP_001884047.1 ComF family protein Machinery gene
  KW3_RS0111705 nfuA 2574069..2574656 (+) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  KW3_RS0111710 nudE 2574795..2575343 (+) 549 WP_000095812.1 ADP compounds hydrolase NudE -
  KW3_RS0111715 cysQ 2575366..2576193 (+) 828 WP_000106799.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  KW3_RS0111720 - 2576245..2577003 (-) 759 WP_000817146.1 type II secretion system protein N -
  KW3_RS0111725 - 2577005..2577502 (-) 498 WP_000661339.1 type II secretion system protein M -
  KW3_RS0111730 gspL 2577512..2578723 (-) 1212 WP_001288747.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32545.47 Da        Isoelectric Point: 8.0588

>NTDB_id=64872 KW3_RS1000000121475 WP_001884047.1 2573121..2573981(+) (comF) [Vibrio cholerae H1]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSANWQDEAHYPDSWLAMLTHWLRKTTAPLLTPECHLCRLALDTNSP
FGVCSACQAWLEHGYRCARCGLPTLTPVDQCGQCLGQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWRRRWQRGFNQSDLLARELANMLNVEYDHQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=64872 KW3_RS1000000121475 WP_001884047.1 2573121..2573981(+) (comF) [Vibrio cholerae H1]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCTGCCAATTGGCAAGATGAAGCACATTACCCCGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTGCTGACTCCGGAATGTCATCTCTGTCGACTGGCGCTAGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTTACCCC
AGTTGATCAGTGCGGGCAGTGTTTGGGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTTCCAC
TTAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCGCCACCCAG
ATTAACGAGCCAGCCCCGTTGCTGTGCAGCGTGCCACTGCATTGGCGGCGACGCTGGCAACGCGGCTTTAATCAAAGCGA
TCTGCTGGCGCGCGAGTTAGCCAATATGCTGAACGTTGAATATGACCACCAACTCTTTGCACGCCGCCGAGCGACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGAATCCACAACCTACGCGATGCGTTTGTGCTGAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KNL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

100

100

1
  comF Vibrio campbellii strain DS40M4

47.059

83.217

0.392

Multiple sequence alignment