Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OHU74_RS14715 Genome accession   NZ_CP107907
Coordinates   3201905..3202882 (-) Length   325 a.a.
NCBI ID   WP_371616318.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00454     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3196905..3207882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU74_RS14695 (OHU74_14690) pfkB 3197327..3198280 (-) 954 WP_371616314.1 1-phosphofructokinase -
  OHU74_RS14700 (OHU74_14695) - 3198277..3199038 (-) 762 WP_371616315.1 DeoR/GlpR family DNA-binding transcription regulator -
  OHU74_RS14705 (OHU74_14700) - 3199172..3200746 (-) 1575 WP_371616316.1 MFS transporter -
  OHU74_RS14710 (OHU74_14705) - 3200810..3201865 (+) 1056 WP_371616317.1 helix-turn-helix transcriptional regulator -
  OHU74_RS14715 (OHU74_14710) rpoS 3201905..3202882 (-) 978 WP_371616318.1 RNA polymerase sigma factor RpoD/SigA Regulator
  OHU74_RS14720 (OHU74_14720) - 3203564..3204806 (+) 1243 Protein_2903 transposase -
  OHU74_RS14725 (OHU74_14725) - 3204878..3205285 (-) 408 WP_371616319.1 hypothetical protein -
  OHU74_RS14730 (OHU74_14730) - 3205278..3206099 (-) 822 WP_371616320.1 dioxygenase -
  OHU74_RS14735 (OHU74_14735) - 3206220..3207758 (-) 1539 WP_371616321.1 MFS transporter -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 36526.29 Da        Isoelectric Point: 5.0418

>NTDB_id=648693 OHU74_RS14715 WP_371616318.1 3201905..3202882(-) (rpoS) [Streptomyces sp. NBC_00454]
MATRAVARRQSTSSARAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVYAQQILDGAIERKGDTPSQEELE
ALAAEGERAKEVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQ
SRTIRLPVHLVEELGRIRRVQREFNREKGRDPEHAEIAAELESTEKRVGDVLDWARDPVSLNMSVDEDGDTQFGDLLEDT
SAISPEQSVMSLLRSEELEDLLGKLDQRTASIIKMRYGIDDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMARDTG
FDAVA

Nucleotide


Download         Length: 978 bp        

>NTDB_id=648693 OHU74_RS14715 WP_371616318.1 3201905..3202882(-) (rpoS) [Streptomyces sp. NBC_00454]
ATGGCAACCCGCGCCGTCGCCCGTCGTCAGTCCACGAGCAGCGCTCGCGCAGTGGGCGGGGAGATCGCAGACCGCGACCT
GGTCGGCATGTACCTCGACGAGATCGCGCGTACTCCGCTGCTCGACGCAGCCAAGGAAGTCGAGCTCTCGCAGATCATCG
AGGCGGGCGTGTACGCCCAGCAGATCCTCGACGGGGCGATAGAGCGCAAGGGCGATACGCCCTCCCAGGAGGAGCTGGAA
GCACTGGCCGCCGAAGGCGAGCGCGCCAAGGAAGTCTTCATCCGCTCCAACCTCCGCCTGGTCGTCGCCGTCGCCCGCCG
CTACCCGCGCAGCGGACTGCCGCTCCTCGACCTCATCCAGGAGGGCAACGCCGGCCTGGTGCGCGCGGTCGAGAAGTTCG
ACTACGCCAAGGGCTTCAAGTTCTCCACGTACGCCACCTGGTGGATCCGCCAGGCCATCACCCGTTCCATCGCCGACCAG
TCCCGCACCATCCGCCTCCCCGTCCACCTGGTGGAGGAGCTCGGCCGGATCCGCAGGGTGCAGCGCGAGTTCAACCGCGA
GAAGGGCCGCGACCCGGAGCACGCGGAGATCGCCGCCGAGCTGGAGTCCACGGAGAAGCGCGTGGGCGACGTCTTGGACT
GGGCGCGCGACCCGGTCAGCCTGAACATGTCGGTGGACGAAGACGGCGACACGCAGTTCGGCGACCTGCTCGAGGACACC
TCGGCCATCTCCCCGGAGCAGTCGGTCATGTCCTTGCTGCGCAGCGAGGAGCTGGAGGACCTGCTGGGGAAGCTGGACCA
GCGAACCGCGTCGATCATCAAGATGCGTTACGGCATAGATGACGGTCGGGAGCGTACGCTGACGGAAGTGGGCAAGCAGC
ACGGTCTGACCCGTGAGCGGATCCGCCAGATCGAGAAGCACGCCCTGCTGGAACTGAAGCGGATGGCGCGCGACACCGGC
TTCGACGCGGTGGCCTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(26-59)

Sigma-70 region 3 (Sigma70_r3)

(172-248)

Sigma-70 region 2 (Sigma70_r2)

(93-162)

Sigma-70, region 4 (Sigma70_r4)

(261-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

39.667

92.308

0.366