Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHU74_RS06320 Genome accession   NZ_CP107907
Coordinates   1364288..1364914 (+) Length   208 a.a.
NCBI ID   WP_371614986.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00454     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1359288..1369914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU74_RS06300 (OHU74_06295) - 1360615..1361232 (-) 618 WP_371614982.1 vitamin K epoxide reductase family protein -
  OHU74_RS06305 (OHU74_06300) - 1361370..1362251 (+) 882 WP_371614983.1 ABC transporter ATP-binding protein -
  OHU74_RS06310 (OHU74_06305) - 1362248..1363078 (+) 831 WP_371614984.1 ABC transporter permease -
  OHU74_RS06315 (OHU74_06310) - 1363054..1364274 (+) 1221 WP_371614985.1 sensor histidine kinase -
  OHU74_RS06320 (OHU74_06315) vraR 1364288..1364914 (+) 627 WP_371614986.1 response regulator Regulator
  OHU74_RS06325 (OHU74_06320) hisS 1365124..1366383 (-) 1260 WP_330295430.1 histidine--tRNA ligase -
  OHU74_RS06330 (OHU74_06325) - 1366394..1367104 (-) 711 WP_371614987.1 MBL fold metallo-hydrolase -
  OHU74_RS06335 (OHU74_06330) - 1367271..1368053 (+) 783 WP_371614988.1 peptidylprolyl isomerase -
  OHU74_RS06340 (OHU74_06335) - 1368245..1369474 (+) 1230 WP_371614989.1 DUF349 domain-containing protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 22287.86 Da        Isoelectric Point: 6.2686

>NTDB_id=648672 OHU74_RS06320 WP_371614986.1 1364288..1364914(+) (vraR) [Streptomyces sp. NBC_00454]
MIRILLADDHPVVREGLRGMLSAEPDLEVVGEASNGPQAEALAARLLPGLDLILMDLRMPGGDGVESIARITAAGLAVRV
VVLTTYEDDRDILRAVEAGAAGYLLKDMARAELADAVRAAVRGETVLAPSVAGRLVDRLRTRPSLPRLSEREVSVLRLVS
EGATNAEIGRRLFVAESTVKTHLLRVFAKLEVTDRTAAVTTAMRHGLL

Nucleotide


Download         Length: 627 bp        

>NTDB_id=648672 OHU74_RS06320 WP_371614986.1 1364288..1364914(+) (vraR) [Streptomyces sp. NBC_00454]
ATGATCCGCATCCTGCTGGCCGACGACCACCCGGTGGTACGGGAGGGCCTGCGCGGCATGCTCAGCGCGGAGCCGGACCT
GGAGGTGGTCGGGGAGGCCTCGAACGGCCCCCAGGCGGAGGCGCTGGCCGCACGGCTGCTCCCCGGCCTCGACCTGATCC
TGATGGACCTGCGGATGCCGGGCGGCGACGGCGTCGAGTCCATCGCGAGGATCACCGCGGCCGGGCTGGCGGTGCGGGTG
GTGGTCCTGACCACGTACGAGGACGACCGGGACATCCTGCGGGCGGTGGAGGCGGGGGCCGCGGGCTACCTGCTGAAGGA
CATGGCCCGGGCGGAACTGGCGGACGCGGTGCGGGCGGCGGTGCGCGGCGAAACGGTCCTGGCCCCCTCGGTGGCGGGCC
GCCTGGTGGACCGGCTGCGCACCCGACCGTCGCTGCCGCGGTTGTCGGAGCGGGAGGTGTCGGTGCTCCGCCTGGTCTCT
GAGGGCGCGACGAACGCGGAGATCGGCCGCCGGTTGTTCGTGGCCGAGTCCACGGTCAAGACGCACCTGTTGCGCGTCTT
CGCGAAGCTGGAGGTCACGGACCGCACGGCGGCGGTGACGACCGCCATGCGGCACGGGTTGCTGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-201)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.827

100

0.418