Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG828_RS46645 Genome accession   NZ_CP107905
Coordinates   10229960..10230622 (-) Length   220 a.a.
NCBI ID   WP_328504562.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00457     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 10224960..10235622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG828_RS46620 (OG828_46595) - 10225307..10225879 (-) 573 WP_328442138.1 GNAT family N-acetyltransferase -
  OG828_RS46625 (OG828_46600) - 10225923..10226513 (-) 591 WP_328442139.1 TetR/AcrR family transcriptional regulator -
  OG828_RS46630 (OG828_46605) - 10226689..10227597 (+) 909 WP_328504559.1 chlorophyllase -
  OG828_RS46635 (OG828_46610) - 10227733..10228947 (+) 1215 WP_328504560.1 MFS transporter -
  OG828_RS46640 (OG828_46615) - 10228958..10229812 (+) 855 WP_328504561.1 alpha/beta hydrolase-fold protein -
  OG828_RS46645 (OG828_46620) vraR 10229960..10230622 (-) 663 WP_328504562.1 response regulator transcription factor Regulator
  OG828_RS46650 (OG828_46625) - 10230597..10231769 (-) 1173 WP_328504563.1 histidine kinase -
  OG828_RS46655 (OG828_46630) - 10231945..10234215 (+) 2271 WP_328504564.1 MMPL family transporter -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23441.15 Da        Isoelectric Point: 5.0569

>NTDB_id=648657 OG828_RS46645 WP_328504562.1 10229960..10230622(-) (vraR) [Streptomyces sp. NBC_00457]
MSIRVLVADDQTIIRTGLRIMLNAQPGIEVVGEATDGQEAVRLARELRPDVCLFDIRMPVLDGLEATQQVAGPGVADPLA
VVVITTFDLDEYVYGALRAGARGFLLKDTGPDLLAQAVRSASGGEALIAPSVTVRLLQTFADLPAGRPVAQPVSPVTARE
EQVLLAVARGLTNTEIADALHISLSTVKTHLASLMAKLGARNRVEIAMWAYETRRILPGT

Nucleotide


Download         Length: 663 bp        

>NTDB_id=648657 OG828_RS46645 WP_328504562.1 10229960..10230622(-) (vraR) [Streptomyces sp. NBC_00457]
GTGTCCATTCGCGTCCTCGTCGCTGACGACCAGACGATCATCCGCACCGGGTTGCGGATCATGCTGAACGCCCAGCCCGG
CATCGAGGTGGTCGGCGAGGCCACCGACGGACAGGAGGCGGTACGTCTGGCCCGCGAACTGCGCCCCGACGTCTGCCTGT
TCGACATCCGCATGCCCGTACTCGACGGGCTCGAGGCCACCCAGCAGGTCGCCGGCCCGGGCGTCGCCGACCCGCTGGCC
GTGGTCGTCATCACCACGTTCGACCTCGACGAGTACGTCTACGGCGCGCTGCGTGCCGGCGCCCGCGGATTCCTCCTCAA
GGACACGGGACCAGACCTTCTGGCCCAGGCCGTACGGTCGGCGTCCGGCGGTGAGGCGCTCATCGCGCCCAGCGTCACCG
TCCGTCTGCTCCAGACATTCGCGGACCTGCCCGCCGGCCGGCCCGTGGCCCAGCCGGTCTCCCCCGTCACCGCCCGCGAG
GAGCAGGTGCTCCTCGCCGTCGCTCGCGGGCTGACCAACACCGAGATCGCCGATGCACTGCACATCAGCCTCAGCACGGT
GAAAACGCATCTGGCCAGCCTGATGGCCAAACTCGGCGCCCGCAACCGGGTCGAGATCGCGATGTGGGCCTACGAAACGC
GCCGTATCCTCCCCGGAACCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.5

98.182

0.368