Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG828_RS45420 Genome accession   NZ_CP107905
Coordinates   9952455..9953471 (-) Length   338 a.a.
NCBI ID   WP_328370611.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00457     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 9947455..9958471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG828_RS45400 (OG828_45375) - 9947972..9949600 (-) 1629 WP_328504449.1 ATP-binding protein -
  OG828_RS45405 (OG828_45380) - 9949609..9950283 (-) 675 WP_328370603.1 response regulator transcription factor -
  OG828_RS45410 (OG828_45385) - 9950845..9951642 (+) 798 WP_328504450.1 VOC family protein -
  OG828_RS45415 (OG828_45390) - 9951689..9952378 (+) 690 WP_328504451.1 ribonuclease H -
  OG828_RS45420 (OG828_45395) cytR 9952455..9953471 (-) 1017 WP_328370611.1 LacI family DNA-binding transcriptional regulator Regulator
  OG828_RS45425 (OG828_45400) - 9953757..9955070 (+) 1314 WP_328504452.1 extracellular solute-binding protein -
  OG828_RS45430 (OG828_45405) - 9955271..9956200 (+) 930 WP_328372717.1 sugar ABC transporter permease -
  OG828_RS45435 (OG828_45410) - 9956214..9957155 (+) 942 WP_328504453.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 36230.95 Da        Isoelectric Point: 5.1546

>NTDB_id=648654 OG828_RS45420 WP_328370611.1 9952455..9953471(-) (cytR) [Streptomyces sp. NBC_00457]
MGDRQLPTIKTVAARAGVGRTTVSRVINGSELVSEKARAAVLAAIAELNYVPNSVARGLVTSRTNSVALVIPESESRLGA
EPYFSAVIRGVSTALAETRTQLQLVLVRDQAERDQLTQSVAERRVDGVLLVSVHEHDPLPGLLEDMGLPTVLAGRRSPDE
SLSHVHSDNTGGAAAAVNHLLTRGRRTVATISGPLDMDVARSRLQGWREALEKAGHEVTDRLVASADFTEEGGEAAMRSL
LEHVPELDAVFVASDVMAAGALAELRRQGRSVPDDVAVVGFDDSIIARHTNPPLSTVRQPVEEIGSMIARILLEEIGDPD
EPRRRVTLPTELVVRESS

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=648654 OG828_RS45420 WP_328370611.1 9952455..9953471(-) (cytR) [Streptomyces sp. NBC_00457]
ATGGGGGACAGACAACTCCCGACCATCAAGACCGTGGCCGCGCGCGCCGGTGTCGGACGCACCACGGTTTCACGAGTCAT
CAACGGCTCCGAGCTCGTCAGTGAGAAGGCCAGGGCCGCCGTGCTCGCCGCCATCGCCGAGCTGAACTACGTCCCGAACT
CGGTTGCCCGGGGACTGGTGACGAGCAGGACGAACTCCGTGGCCCTGGTGATCCCCGAGTCGGAGAGCAGACTGGGCGCG
GAGCCCTACTTCTCGGCGGTCATCCGCGGGGTCAGCACCGCCCTCGCGGAGACCCGCACGCAGCTCCAACTGGTGCTCGT
ACGCGACCAGGCCGAGCGCGACCAGCTCACCCAGTCGGTTGCGGAGCGGCGTGTCGACGGGGTGCTCCTGGTCTCGGTGC
ACGAACACGACCCGCTGCCGGGGCTGTTGGAGGACATGGGACTGCCCACGGTGCTCGCCGGGCGCCGCTCCCCCGACGAG
TCGCTCAGCCACGTGCACTCGGACAACACCGGCGGTGCCGCTGCGGCCGTCAACCACCTCCTGACGCGAGGGCGGCGGAC
CGTCGCCACCATCAGCGGACCGCTCGACATGGACGTGGCGCGCAGCAGGCTCCAGGGCTGGCGCGAGGCCCTCGAGAAGG
CGGGCCACGAGGTCACCGACCGGCTCGTGGCCTCGGCCGACTTCACCGAGGAGGGCGGCGAGGCGGCGATGCGTTCACTC
CTTGAACACGTCCCCGAGCTCGACGCCGTGTTCGTCGCCTCCGACGTCATGGCTGCGGGGGCACTGGCGGAGCTGCGCAG
GCAAGGCAGGAGCGTCCCCGACGACGTGGCCGTGGTCGGATTCGACGACTCCATCATCGCCCGCCACACCAATCCGCCCC
TCAGCACCGTGCGTCAGCCCGTCGAGGAGATCGGCAGCATGATCGCCCGGATCCTTCTGGAGGAGATCGGCGATCCCGAC
GAGCCGCGTCGGCGCGTCACGCTTCCCACTGAGCTCGTCGTACGCGAATCGTCATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(8-53)

Periplasmic binding protein-like domain (Peripla_BP_3)

(177-338)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.232

100

0.37
  cytR Vibrio parahaemolyticus RIMD 2210633

35.942

100

0.367