Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   KW3_RS0111495 Genome accession   NZ_AKGH01000001
Coordinates   2523377..2524384 (-) Length   335 a.a.
NCBI ID   WP_000224452.1    Uniprot ID   A0A085RG68
Organism   Vibrio cholerae H1     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2518377..2529384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KW3_RS0111470 rraA 2518952..2519467 (-) 516 WP_000456236.1 ribonuclease E activity regulator RraA -
  KW3_RS0111475 - 2519542..2520459 (-) 918 WP_001066162.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  KW3_RS0111480 hslU 2520563..2521894 (-) 1332 WP_001293370.1 HslU--HslV peptidase ATPase subunit -
  KW3_RS0111485 hslV 2521960..2522517 (-) 558 WP_000208249.1 ATP-dependent protease subunit HslV -
  KW3_RS0111490 - 2522654..2523205 (-) 552 WP_001884022.1 SPOR domain-containing protein -
  KW3_RS0111495 cytR 2523377..2524384 (-) 1008 WP_000224452.1 DNA-binding transcriptional regulator CytR Regulator
  KW3_RS0111500 priA 2524690..2526894 (-) 2205 WP_001247858.1 primosomal protein N' -
  KW3_RS0111505 rpmE 2527149..2527367 (+) 219 WP_000643446.1 50S ribosomal protein L31 -
  KW3_RS0111510 - 2527675..2528952 (+) 1278 WP_001278588.1 malic enzyme-like NAD(P)-binding protein -
  KW3_RS0111515 metJ 2529063..2529380 (-) 318 WP_000796267.1 met regulon transcriptional regulator MetJ -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37018.59 Da        Isoelectric Point: 7.0759

>NTDB_id=64865 KW3_RS0111495 WP_000224452.1 2523377..2524384(-) (cytR) [Vibrio cholerae H1]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=64865 KW3_RS0111495 WP_000224452.1 2523377..2524384(-) (cytR) [Vibrio cholerae H1]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085RG68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

100

100

1
  cytR Vibrio parahaemolyticus RIMD 2210633

90.719

99.701

0.904

Multiple sequence alignment