Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG828_RS45195 Genome accession   NZ_CP107905
Coordinates   9904577..9905236 (-) Length   219 a.a.
NCBI ID   WP_328504414.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00457     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 9899577..9910236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG828_RS45175 (OG828_45150) urtA 9900086..9901342 (-) 1257 WP_328370496.1 urea ABC transporter substrate-binding protein -
  OG828_RS45180 (OG828_45155) - 9901555..9902667 (-) 1113 WP_328504411.1 substrate-binding domain-containing protein -
  OG828_RS45185 (OG828_45160) - 9902968..9903408 (+) 441 WP_328504412.1 MarR family transcriptional regulator -
  OG828_RS45190 (OG828_45165) - 9903631..9904521 (+) 891 WP_328504413.1 glycoside hydrolase family 19 protein -
  OG828_RS45195 (OG828_45170) vraR 9904577..9905236 (-) 660 WP_328504414.1 response regulator transcription factor Regulator
  OG828_RS45200 (OG828_45175) - 9905233..9906360 (-) 1128 WP_328504415.1 sensor histidine kinase -
  OG828_RS45205 (OG828_45180) - 9906596..9906991 (+) 396 WP_328504416.1 DUF6223 family protein -
  OG828_RS45210 (OG828_45185) - 9907099..9908334 (+) 1236 WP_328504417.1 acyltransferase -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23845.65 Da        Isoelectric Point: 5.0976

>NTDB_id=648648 OG828_RS45195 WP_328504414.1 9904577..9905236(-) (vraR) [Streptomyces sp. NBC_00457]
MIRVLLVDDQPLIRSGFRALLDLEDDIEVVAEAADGTEGLALIKEQLPDVALIDIQMPVMDGIEATRRIAADPALAGVHV
VMLTNYGMDEYVFEALRAGAAGFLVKDIVPEDFLHAVRVAARGDALLAPSITRKLIHRYVTQPLPTAGAALTELTGRERE
AVTLVAQGLSNDQIADRMVISPMTAKTHINRAMTKLHTRDRAQLVVLAYESGLVIPRNH

Nucleotide


Download         Length: 660 bp        

>NTDB_id=648648 OG828_RS45195 WP_328504414.1 9904577..9905236(-) (vraR) [Streptomyces sp. NBC_00457]
ATGATCCGTGTCCTGCTGGTCGACGACCAGCCGCTCATCCGCAGCGGTTTCCGCGCACTGCTCGACCTCGAGGACGACAT
CGAGGTGGTCGCCGAGGCCGCCGACGGCACGGAGGGCCTGGCACTCATCAAGGAGCAGTTGCCCGACGTCGCGCTCATCG
ACATCCAGATGCCGGTCATGGACGGCATCGAGGCGACCCGGCGCATCGCCGCGGACCCCGCCCTGGCCGGTGTGCACGTC
GTCATGCTGACCAACTACGGCATGGACGAGTACGTCTTCGAAGCGCTGCGCGCCGGTGCCGCCGGGTTCCTGGTCAAGGA
CATCGTGCCGGAGGACTTTCTGCACGCCGTACGGGTCGCCGCCCGCGGCGACGCCCTGCTCGCCCCGTCCATCACCCGCA
AGCTGATCCACCGGTACGTCACCCAGCCCCTCCCCACCGCCGGCGCCGCGCTCACGGAGCTGACCGGCCGGGAACGCGAG
GCGGTCACCCTGGTCGCACAGGGCCTGTCCAACGACCAGATCGCCGACCGCATGGTGATCAGCCCGATGACCGCGAAGAC
CCACATCAACCGGGCGATGACGAAACTCCACACCCGCGACCGCGCCCAACTCGTCGTCCTCGCCTACGAGTCCGGCCTGG
TCATCCCGCGCAACCACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.318

97.717

0.374