Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG828_RS33535 Genome accession   NZ_CP107905
Coordinates   7367137..7368870 (-) Length   577 a.a.
NCBI ID   WP_328503261.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00457     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7362137..7373870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG828_RS33525 (OG828_33490) - 7363753..7365027 (+) 1275 WP_328364886.1 RNA polymerase sigma factor -
  OG828_RS33530 (OG828_33495) rcrQ 7365209..7367137 (-) 1929 WP_328503260.1 ABC transporter ATP-binding protein Regulator
  OG828_RS33535 (OG828_33500) rcrP 7367137..7368870 (-) 1734 WP_328503261.1 ABC transporter ATP-binding protein Regulator
  OG828_RS33540 (OG828_33505) - 7369054..7370508 (-) 1455 WP_328364895.1 FGGY family carbohydrate kinase -
  OG828_RS33545 (OG828_33510) - 7370660..7370959 (-) 300 WP_328503262.1 YtxH domain-containing protein -
  OG828_RS33565 (OG828_33530) - 7372039..7372437 (+) 399 WP_328364932.1 PIN domain-containing protein -
  OG828_RS33570 (OG828_33535) - 7372563..7373366 (+) 804 WP_328503263.1 NAD(P)H-binding protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62624.89 Da        Isoelectric Point: 5.7191

>NTDB_id=648624 OG828_RS33535 WP_328503261.1 7367137..7368870(-) (rcrP) [Streptomyces sp. NBC_00457]
MLIRLLRTYLRPYRKPIAVLVLLQFLQTCATLYLPTLNADIIDNGVVNGDTGYILSYGALMIGISLVQVVCNIGAVYYGA
RTAAALGRDVRGAVFDRVQSFSAREVGHFGAPTLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIVLALGLDVPLSGV
LVAVVPVLGICVTLIVRRLRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDEYEQQRFRHANAELTEMSLATGKLLAL
MFPMVMTVVNLSSIAVVWFGAHRIDSGGMEIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PTAPVVKLLRHGHLEMRGAGFRYPGAEEPVLKAVDLVAQPGETTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVAVA
SLEPKLLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKEFVERLEGGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAQETAEATVVIVAQRVATIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=648624 OG828_RS33535 WP_328503261.1 7367137..7368870(-) (rcrP) [Streptomyces sp. NBC_00457]
GTGCTCATACGACTTCTGCGGACCTATCTCAGGCCCTACAGAAAACCCATCGCCGTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTACCTGCCCACGCTGAACGCCGACATCATCGACAACGGTGTCGTGAACGGAGACACCGGCTACA
TCCTTTCCTACGGCGCCCTGATGATCGGCATCTCGCTGGTGCAGGTCGTCTGCAACATCGGTGCCGTGTACTACGGCGCC
CGTACGGCGGCGGCGCTCGGGCGTGACGTCCGGGGTGCCGTCTTCGACCGGGTGCAGTCCTTCTCCGCCCGTGAGGTCGG
TCATTTCGGGGCGCCCACGCTGATCACGCGGACGACCAATGACGTCCAGCAGGTGCAGATGCTGGCGCTGATGACCTTCA
CGCTGCTCGTGTCGGCGCCGATCATGTGCGTCGGCGGCATCGTGCTGGCGCTCGGGCTCGATGTGCCGCTGTCCGGGGTG
CTGGTCGCGGTGGTGCCGGTGCTTGGCATCTGCGTGACGTTGATCGTGCGGCGGCTGCGGCCGCTGTTCCGGACGATGCA
GGAACGGCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCCTTCGTCCGCGACG
AGTACGAGCAGCAGCGCTTCCGGCACGCCAACGCCGAGCTCACCGAGATGTCCCTGGCCACCGGCAAGCTGCTGGCGCTG
ATGTTCCCGATGGTGATGACGGTGGTGAACCTGTCGTCGATCGCGGTGGTGTGGTTCGGCGCGCACCGCATCGACAGCGG
TGGGATGGAGATCGGCGATCTGACGGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGCATCCAGGAGGTGCTGGACACGTCCTCGTCGGTGGTTCCG
CCGACCGCGCCCGTGGTCAAGCTGCTTCGGCACGGGCATCTGGAGATGCGCGGGGCCGGGTTCCGCTACCCGGGTGCCGA
GGAGCCGGTGCTGAAGGCCGTCGACCTGGTGGCCCAGCCCGGTGAGACGACCGCCGTGATCGGCTCGACCGGCAGCGGCA
AGTCCACGCTGCTGGGGCTGGTGCCGCGGCTGTTCGACGCGACCGACGGGGAGGTGCTCGTCGACGGCGTCGCGGTGGCC
TCCCTCGAACCGAAGCTGCTGGCGAAGACGGTCGGGCTCGTCCCGCAGAAGCCGTATCTCTTCGCGGGCACCGTGGCGAC
CAATCTGCGGTACGGCAATCCGGACGCGACGGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGAGTTCG
TGGAGCGGCTCGAAGGCGGGCTCGACTCGCCGATCGCGCAGGGCGGCACGAACGTCTCCGGTGGTCAGCGGCAGCGGCTC
GCGATCGCCCGCACGCTGGTCCAGCGGCCGGAGATCTATCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCGACCGA
CGCGGCGTTGCGTGCCGCGCTCGCCCAGGAGACCGCCGAAGCGACCGTCGTGATCGTCGCCCAGCGGGTGGCGACCATCC
GGGATGCAGACCGGATCGTCGTACTCGACGAAGGGCGGGTGGTCGGGACGGGCCGGCACCACGAGCTGATGGCGGACAAC
GAGACCTATCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.884

94.107

0.385