Detailed information NTG0648609

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OG828_RS28810
• Genome accession: NZ_CP107905
• Coordinates: 6297417..6298412 (+)
• Length: 331 a.a.
• NCBI ID: WP_328362927.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00457
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 6292417..6303412

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG828_RS28785 (OG828_28760)	-	6292676..6293323 (+)	648	WP_210576543.1	TetR/AcrR family transcriptional regulator	-
OG828_RS28790 (OG828_28765)	-	6293461..6295002 (+)	1542	WP_328362919.1	MFS transporter	-
OG828_RS28795 (OG828_28770)	-	6295218..6295745 (-)	528	WP_328502763.1	MarR family transcriptional regulator	-
OG828_RS28800 (OG828_28775)	-	6295876..6296667 (+)	792	WP_328362923.1	class III extradiol ring-cleavage dioxygenase	-
OG828_RS28805 (OG828_28780)	-	6296702..6297220 (-)	519	WP_328502764.1	N-acetyltransferase family protein	-
OG828_RS28810 (OG828_28785)	rpoS	6297417..6298412 (+)	996	WP_328362927.1	sigma-70 family RNA polymerase sigma factor	Regulator
OG828_RS28815 (OG828_28790)	-	6298898..6299500 (+)	603	WP_328442423.1	TetR family transcriptional regulator	-
OG828_RS28820 (OG828_28795)	-	6299565..6300530 (-)	966	WP_328502765.1	WYL domain-containing protein	-
OG828_RS28825 (OG828_28800)	-	6300593..6302107 (+)	1515	WP_328502766.1	MFS transporter	-
OG828_RS28830 (OG828_28805)	-	6302280..6303041 (+)	762	WP_210576535.1	DeoR/GlpR family DNA-binding transcription regulator	-

Sequence

Protein

• Length: 331 a.a.
• Molecular weight: 36963.65 Da
• Isoelectric Point: 4.9641

>NTDB_id=648609 OG828_RS28810 WP_328362927.1 6297417..6298412(+) (rpoS) [Streptomyces sp. NBC_00457]
MATGAVARRQSAKGGTDAARSVRAHGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFARQVLDGEAESQVDA
TREELEALIAEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAIT
RSIADQSRTIRLPVHLVEELGRIRRIQREFNRENGREPEPAEIAAELGSTPERVTDVLDWARDPVSLNMSVDDDGDTQFG
DLLEDTSAVSPEQSVLTLLRSEGLEDLISRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALMELKK
LARDTGFDAAA

Nucleotide

• Length: 996 bp

>NTDB_id=648609 OG828_RS28810 WP_328362927.1 6297417..6298412(+) (rpoS) [Streptomyces sp. NBC_00457]
ATGGCAACCGGTGCCGTCGCCCGTCGTCAGTCCGCCAAGGGCGGGACCGACGCGGCACGCAGTGTTCGCGCCCACGGCGG
CGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGCACACCGCTGCTCGACGCCGCCAAGGAGG
TCGAGCTGTCTCAGACCATCGAGGCGGGTGTGTTCGCGCGACAGGTCCTCGACGGCGAGGCGGAGTCCCAGGTGGACGCC
ACCCGCGAGGAGCTCGAGGCACTGATCGCCGAGGGTGAGCGGGCCAAGGACGTCTTCATCCGCTCCAACCTCCGCCTGGT
CGTCGCCGTGGCCCGCCGCTACCCCCGCAGCGGCCTGCCCCTGCTGGACCTCATCCAGGAGGGCAACGCCGGCTTGGTGC
GCGCGGTGGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGCCAGGCCATCACC
CGCTCGATAGCCGACCAGTCCCGCACCATCCGGCTGCCCGTCCACCTGGTGGAGGAGCTGGGCCGGATCCGCCGCATCCA
GCGCGAGTTCAACCGGGAGAACGGCCGCGAGCCGGAGCCCGCCGAGATCGCCGCCGAGCTCGGCTCGACGCCGGAGCGCG
TGACGGACGTCCTGGACTGGGCCCGTGACCCGGTCTCGCTCAACATGTCGGTGGACGACGACGGCGACACCCAGTTCGGC
GACCTGCTGGAGGACACCTCCGCGGTCTCGCCCGAGCAGTCGGTGCTGACGCTGCTGCGCAGCGAGGGCCTGGAAGACCT
GATCAGCCGCCTCGACCAGCGCACCGCCTCGATCATCAAGATGCGGTACGGCATCGAGGACGGCCGGGAGCGCACGCTGA
CCGAGGTCGGCAAGGAGCACGGCCTCACGCGCGAGCGGATCCGGCAGATCGAGAAGCACGCCCTGATGGAGCTGAAGAAG
CTGGCCCGGGACACCGGGTTCGACGCGGCGGCGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (178-254)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (33-66)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (268-320)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	40.468	90.332	0.366