Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG828_RS14310 Genome accession   NZ_CP107905
Coordinates   3150667..3151446 (+) Length   259 a.a.
NCBI ID   WP_301984767.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00457     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3145667..3156446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG828_RS14295 (OG828_14280) - 3145879..3146412 (+) 534 WP_328501343.1 TerD family protein -
  OG828_RS14300 (OG828_14285) - 3146480..3149386 (-) 2907 WP_328438163.1 vitamin B12-dependent ribonucleotide reductase -
  OG828_RS14305 (OG828_14290) nrdR 3149551..3150102 (-) 552 WP_328501344.1 transcriptional regulator NrdR -
  OG828_RS14310 (OG828_14295) dinR/lexA 3150667..3151446 (+) 780 WP_301984767.1 transcriptional repressor LexA Regulator
  OG828_RS14315 (OG828_14300) - 3151559..3153529 (-) 1971 WP_328501345.1 ATP-dependent DNA helicase -
  OG828_RS14320 (OG828_14305) - 3154020..3154718 (-) 699 WP_328371837.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28035.74 Da        Isoelectric Point: 7.0668

>NTDB_id=648573 OG828_RS14310 WP_301984767.1 3150667..3151446(+) (dinR/lexA) [Streptomyces sp. NBC_00457]
MTTTADSATITAQDRSQGRLEPVHAMNEATNPEGHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQAASVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHNSAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=648573 OG828_RS14310 WP_301984767.1 3150667..3151446(+) (dinR/lexA) [Streptomyces sp. NBC_00457]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCACCAATCCCGAGGGGCACAAGCGCTCCCTACCGGGCCGACCTCCGGGGATCCGGGCGGACAGCTCGGGCCTCA
CAGACCGGCAGCGCCGCGTCATCGAGGTCATCAGGGACTCTGTGCAACGGCGCGGATACCCGCCGTCGATGCGCGAGATC
GGGCAGGCTGTCGGCCTTTCCAGCACATCCTCCGTCGCACACCAGCTGATGGCACTGGAGCGCAAGGGCTTCCTGCGCCG
TGACCCGCACCGTCCGCGCGCGTACGAAGTGCGAGGCTCGGACCAGGCCGCCTCCGTGCAGCCCACGGACACCGCGGGCA
AGCCGGCCGCGTCGTATGTGCCGCTGGTCGGCCGTATCGCCGCCGGTGGCCCGATCCTGGCCGAGGAGTCGGTCGAGGAC
GTCTTCCCCCTCCCCCGCCAGCTGGTCGGTGACGGTGAGCTGTTCGTACTGAAGGTCGTCGGCGACTCGATGATCGAGGC
CGCGATCTGCGACGGCGACTGGGTCACGGTCCGCCGCCAGCCCGTCGCCGAGAACGGCGACATCGTGGCCGCCATGCTCG
AGGGCGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCATGTCTGGCTCCTCCCGCACAACTCGGCGTACGAGCCG
ATCCCGGGCGACGACGCCACCATCCTCGGCAAGGTGGTGGCTGTGCTGCGGCGCGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(141-253)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.972

81.467

0.375