Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG828_RS11050 Genome accession   NZ_CP107905
Coordinates   2416787..2417467 (-) Length   226 a.a.
NCBI ID   WP_328353267.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00457     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2411787..2422467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG828_RS11030 (OG828_11015) - 2411928..2413112 (-) 1185 WP_210571822.1 ROK family glucokinase -
  OG828_RS11035 (OG828_11020) - 2413254..2413991 (-) 738 WP_210572238.1 GntR family transcriptional regulator -
  OG828_RS11040 (OG828_11025) - 2414122..2415144 (+) 1023 WP_328353261.1 Gfo/Idh/MocA family oxidoreductase -
  OG828_RS11045 (OG828_11030) - 2415511..2416689 (-) 1179 WP_328500994.1 cytochrome P450 -
  OG828_RS11050 (OG828_11035) vraR 2416787..2417467 (-) 681 WP_328353267.1 response regulator transcription factor Regulator
  OG828_RS11055 (OG828_11040) - 2417515..2418765 (-) 1251 WP_328500995.1 histidine kinase -
  OG828_RS11060 (OG828_11045) - 2418946..2419146 (+) 201 WP_328353273.1 hypothetical protein -
  OG828_RS11065 (OG828_11050) - 2419150..2419536 (-) 387 WP_328500996.1 ribonuclease domain-containing protein -
  OG828_RS11070 (OG828_11055) - 2419668..2420294 (-) 627 WP_328437728.1 dihydrofolate reductase family protein -
  OG828_RS11075 (OG828_11060) - 2420369..2420730 (-) 362 Protein_2207 AIM24 family protein -
  OG828_RS11080 (OG828_11065) - 2420821..2421564 (+) 744 WP_328500997.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24222.72 Da        Isoelectric Point: 4.8999

>NTDB_id=648564 OG828_RS11050 WP_328353267.1 2416787..2417467(-) (vraR) [Streptomyces sp. NBC_00457]
MTAIRVLLVDDDPLVRAGLSFMMGGAEDIEIVGEAADGREVEALVDRTSPDVVLMDIRMPSMDGLTATERLRGRKDAPQV
VVLTTFHADEQVLRALRAGAAGFVLKDTPPAEIVDAVRRVAAGDPVLSPSVTRRLMEHAAGAAADTRRARARARIEALND
REREVAVAVGRGLSNAEIAAALFMSVATVKTHVSRILAKLDLNNRVQIALLAYDAGLLEESEEDGH

Nucleotide


Download         Length: 681 bp        

>NTDB_id=648564 OG828_RS11050 WP_328353267.1 2416787..2417467(-) (vraR) [Streptomyces sp. NBC_00457]
ATGACTGCGATCAGAGTGCTCCTCGTCGACGACGACCCCCTCGTACGGGCCGGGCTGTCCTTCATGATGGGCGGGGCCGA
GGACATCGAGATCGTCGGGGAGGCGGCCGACGGCCGTGAGGTCGAGGCACTCGTCGACCGCACCAGCCCGGACGTCGTCC
TGATGGACATCCGGATGCCGTCGATGGACGGGCTGACGGCCACCGAGCGGCTGCGCGGCCGTAAGGACGCCCCGCAGGTC
GTGGTCCTGACCACCTTCCACGCCGACGAACAGGTGCTGCGGGCGCTGCGTGCCGGCGCCGCCGGATTCGTCCTGAAGGA
CACCCCGCCCGCCGAGATCGTCGACGCGGTGCGCCGGGTCGCGGCCGGCGACCCCGTCCTGTCGCCCTCTGTCACCCGCC
GGCTGATGGAGCACGCGGCCGGTGCCGCGGCCGACACCCGGCGGGCACGCGCGCGTGCCCGCATCGAGGCCCTCAACGAC
CGTGAACGCGAGGTCGCCGTCGCGGTCGGCCGGGGGCTGTCCAACGCCGAGATCGCCGCCGCCCTCTTCATGAGCGTGGC
CACCGTCAAGACCCATGTCTCCCGCATCCTGGCCAAGCTCGACCTCAACAACCGTGTGCAGATCGCCCTGTTGGCATACG
ACGCGGGACTTCTGGAGGAATCCGAGGAGGACGGGCACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(157-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40

97.345

0.389