Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHN74_RS41635 Genome accession   NZ_CP107903
Coordinates   9512318..9513340 (-) Length   340 a.a.
NCBI ID   WP_327699754.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00459     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 9507318..9518340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN74_RS41615 (OHN74_41615) - 9508028..9508864 (+) 837 WP_327699752.1 endonuclease/exonuclease/phosphatase family protein -
  OHN74_RS41620 (OHN74_41625) - 9509371..9509496 (+) 126 WP_327700451.1 RICIN domain-containing protein -
  OHN74_RS41625 (OHN74_41630) - 9509832..9510803 (+) 972 WP_327700452.1 expansin EXLX1 family cellulose-binding protein -
  OHN74_RS41630 (OHN74_41635) - 9510936..9512084 (-) 1149 WP_327699753.1 cellulose binding domain-containing protein -
  OHN74_RS41635 (OHN74_41640) cytR 9512318..9513340 (-) 1023 WP_327699754.1 LacI family DNA-binding transcriptional regulator Regulator
  OHN74_RS41640 (OHN74_41645) - 9513708..9516626 (-) 2919 WP_327699755.1 glycoside hydrolase family 48 protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37095.21 Da        Isoelectric Point: 5.3583

>NTDB_id=648552 OHN74_RS41635 WP_327699754.1 9512318..9513340(-) (cytR) [Streptomyces sp. NBC_00459]
MGKRRPGTPTLEEVAVHARVGRGTVSRVINNAAGVKESTRRAVQRAIEELGYVPNLAARSLAGRRADAVALVMTEPDWRQ
FAEPFFSEIVRSLGDALTDTGIQLLLTLVRSDTERQRFLEYARGGRVDGVLLMSVHAGDPLPDMLAEARLPTVLLGRRSG
EEYVSYVDADNIGGARSAVSHLLRQGRRAIATITGPLDLYAAQCRLRGYEEALAMAGLEGEPTRVAESDFTAESGRRAMA
ELLERYPDIDGVLAASDTTAAGALEALRAAGRRVPEDVAVIGFDDFSLARRTDPPLTTVRQPIEEIGRAMIRLLLEEMEE
GAVAWRHVILRTELVVREST

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=648552 OHN74_RS41635 WP_327699754.1 9512318..9513340(-) (cytR) [Streptomyces sp. NBC_00459]
ATGGGAAAACGACGCCCGGGCACACCGACGCTGGAGGAAGTGGCCGTCCACGCGCGGGTGGGACGCGGCACGGTCTCCCG
TGTCATCAACAACGCGGCGGGCGTGAAGGAGTCGACACGTCGGGCCGTCCAGCGAGCCATCGAGGAACTGGGCTACGTGC
CCAATCTCGCGGCCCGTTCACTGGCCGGGCGACGAGCCGACGCCGTCGCCCTGGTCATGACTGAGCCGGACTGGCGGCAG
TTCGCCGAGCCCTTCTTCTCCGAGATCGTCCGCTCGCTCGGAGACGCGCTGACAGACACCGGGATCCAACTCCTGCTGAC
CCTGGTCCGCTCGGACACCGAGCGACAGCGCTTCCTCGAGTACGCGCGCGGCGGCCGGGTCGACGGAGTGCTGCTGATGT
CCGTGCACGCCGGTGACCCGCTGCCCGACATGCTCGCCGAAGCCCGGCTGCCGACCGTGCTGCTCGGGCGCCGCTCGGGC
GAGGAATACGTCAGCTATGTCGACGCCGACAACATCGGCGGAGCCCGCAGCGCCGTCTCCCACCTGCTGCGACAGGGGCG
CAGAGCGATAGCGACCATCACCGGACCGCTCGACCTGTACGCGGCACAGTGCCGACTGCGCGGCTACGAAGAGGCCCTGG
CGATGGCGGGCCTGGAGGGCGAACCGACACGTGTCGCCGAGAGCGACTTCACGGCGGAGAGCGGACGCCGCGCCATGGCC
GAACTCCTCGAACGGTATCCGGACATCGACGGCGTCCTCGCCGCGTCGGACACCACAGCCGCGGGGGCCCTGGAGGCCCT
GCGCGCGGCCGGCCGTCGGGTGCCCGAGGATGTCGCCGTGATCGGGTTCGACGACTTTTCGCTGGCCCGGCGGACCGACC
CTCCCCTGACCACGGTGCGCCAGCCGATCGAGGAGATCGGGCGGGCCATGATCCGACTGCTCCTGGAGGAGATGGAGGAG
GGCGCCGTGGCCTGGCGTCACGTCATCCTCCGTACGGAGCTTGTGGTACGCGAGTCGACCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(179-340)

Bacterial regulatory proteins, lacI family (LacI)

(10-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.283

99.706

0.362