Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OHN74_RS36110 Genome accession   NZ_CP107903
Coordinates   8193500..8194504 (-) Length   334 a.a.
NCBI ID   WP_327698766.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00459     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 8188500..8199504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN74_RS36090 (OHN74_36085) sthA 8188653..8190056 (-) 1404 WP_327698762.1 Si-specific NAD(P)(+) transhydrogenase -
  OHN74_RS36095 (OHN74_36090) - 8190173..8191492 (-) 1320 WP_327698763.1 DUF3533 domain-containing protein -
  OHN74_RS36100 (OHN74_36095) - 8191799..8192005 (+) 207 WP_327698764.1 hypothetical protein -
  OHN74_RS36105 (OHN74_36100) - 8192054..8193265 (-) 1212 WP_327698765.1 IS110 family transposase -
  OHN74_RS36110 (OHN74_36105) rpoS 8193500..8194504 (-) 1005 WP_327698766.1 RNA polymerase sigma factor Regulator
  OHN74_RS36115 (OHN74_36110) - 8194811..8195203 (-) 393 WP_327698767.1 SCO5389 family protein -
  OHN74_RS36120 (OHN74_36115) - 8195270..8196220 (-) 951 WP_327698768.1 ATP-binding protein -
  OHN74_RS36125 (OHN74_36120) - 8196405..8196941 (+) 537 WP_327698769.1 GNAT family N-acetyltransferase -
  OHN74_RS36130 (OHN74_36125) - 8197091..8198593 (+) 1503 WP_327698770.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37478.57 Da        Isoelectric Point: 4.7557

>NTDB_id=648544 OHN74_RS36110 WP_327698766.1 8193500..8194504(-) (rpoS) [Streptomyces sp. NBC_00459]
MATDTEVTDVFDPATEDESDAPLPRLATGGGSVDQVRDYLRLIARVRLLSAEQEVDLAKRIEAGLYAEHKLLEDPPEDPA
LQRELEILTADGERAKSHLIEANLRLVVSVAKRYTGRGLLFLDLVQEGNTGLIRAVEKFDYAKGFKFSTYATWWIRQAIS
RALADQGRTIRIPVHLVEVINRVARTRRELIQDFGTEPTPEELAEKAGVPVERLPELTAYTREPVSLHTALGEDGDGELG
DLIEDRDSVTPMEMVTFLLLQETIQSILAEMTPREAGIISLRYGLSGGRTRTLEEIGQVYGVTRERIRQIESKTMSKLRH
PSRSQVLRDYLDAM

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=648544 OHN74_RS36110 WP_327698766.1 8193500..8194504(-) (rpoS) [Streptomyces sp. NBC_00459]
ATGGCGACCGATACCGAGGTGACCGATGTGTTCGACCCGGCCACCGAGGACGAGAGCGATGCTCCCCTCCCCCGGCTGGC
CACCGGGGGAGGGTCGGTCGACCAGGTGCGGGACTACCTCCGGCTGATCGCCCGGGTCCGGCTCCTCAGCGCCGAGCAGG
AGGTCGACCTCGCGAAACGGATCGAGGCCGGCCTGTACGCCGAGCACAAACTGCTGGAGGACCCACCGGAGGACCCCGCA
CTCCAGCGGGAGTTGGAGATCCTCACCGCGGACGGAGAGCGCGCCAAGTCCCACCTCATCGAGGCGAACCTGCGCCTGGT
CGTGTCGGTCGCCAAGCGTTACACGGGCCGCGGACTGCTGTTCCTGGACCTGGTCCAGGAGGGCAACACGGGCCTGATCC
GGGCCGTCGAGAAGTTCGACTACGCCAAAGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGGCAGGCGATCTCC
CGCGCGCTGGCGGACCAGGGCCGGACCATCCGCATTCCCGTACATCTCGTGGAGGTCATCAACCGGGTGGCCCGCACCCG
CCGCGAGCTGATCCAGGACTTCGGGACGGAGCCCACACCGGAGGAACTCGCGGAGAAGGCGGGCGTCCCCGTGGAACGGC
TGCCGGAGCTCACCGCCTACACCAGGGAGCCCGTCTCGCTGCACACCGCCCTCGGCGAGGACGGCGACGGCGAACTCGGC
GACCTGATCGAGGACCGGGACAGCGTCACCCCCATGGAGATGGTCACCTTCCTGCTGCTCCAGGAGACCATCCAGTCCAT
TCTCGCGGAGATGACCCCCCGGGAGGCCGGCATCATCTCCCTGCGCTACGGCCTGTCCGGCGGCCGGACCAGAACACTGG
AGGAGATCGGCCAGGTGTACGGCGTGACGCGCGAGCGCATCCGCCAGATCGAGTCCAAGACGATGTCGAAACTGCGCCAC
CCGTCCCGCTCCCAGGTGCTGCGGGACTACCTCGACGCCATGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(99-168)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(36-67)

Sigma-70 region 3 (Sigma70_r3)

(178-255)

Sigma-70, region 4 (Sigma70_r4)

(268-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

39.875

96.108

0.383