Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHN74_RS32405 Genome accession   NZ_CP107903
Coordinates   7315548..7316327 (-) Length   259 a.a.
NCBI ID   WP_164318350.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00459     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7310548..7321327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN74_RS32395 (OHN74_32385) - 7312519..7313280 (+) 762 WP_327698101.1 GNAT family N-acetyltransferase -
  OHN74_RS32400 (OHN74_32390) - 7313365..7315392 (+) 2028 WP_327698102.1 ATP-dependent DNA helicase -
  OHN74_RS32405 (OHN74_32395) dinR/lexA 7315548..7316327 (-) 780 WP_164318350.1 transcriptional repressor LexA Regulator
  OHN74_RS32410 (OHN74_32400) nrdR 7316870..7317421 (+) 552 WP_327698103.1 transcriptional regulator NrdR -
  OHN74_RS32415 (OHN74_32405) - 7317588..7320485 (+) 2898 WP_327698104.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 27994.67 Da        Isoelectric Point: 7.4698

>NTDB_id=648535 OHN74_RS32405 WP_164318350.1 7315548..7316327(-) (dinR/lexA) [Streptomyces sp. NBC_00459]
MTTTADSATITAQDRSQSRLEPVHAMNEATNPEGPKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQGASVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMTEAAIVDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNSAYQP
IPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=648535 OHN74_RS32405 WP_164318350.1 7315548..7316327(-) (dinR/lexA) [Streptomyces sp. NBC_00459]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCACGAATCCTGAGGGGCCCAAGCGGTCCCTCCCTGGACGACCTCCAGGAATCCGAGCGGACAGCTCGGGACTCA
CCGACCGGCAACGGCGCGTGATCGAGGTCATCAGGGACTCCGTGCAACGACGCGGTTACCCGCCGTCGATGCGTGAGATC
GGGCAGGCAGTCGGCCTCTCCAGTACTTCATCGGTCGCACATCAGCTCATGGCTCTGGAGCGCAAGGGATTCCTGCGCCG
CGATCCGCATCGCCCGCGTGCCTATGAAGTACGCGGTTCCGACCAAGGGGCTTCCGTGCAGCCCACGGACACCGCGGGCA
AACCCGCCGCGTCGTACGTCCCGCTCGTGGGCCGTATCGCCGCCGGCGGTCCCATCCTCGCCGAGGAATCGGTCGAGGAT
GTGTTCCCCCTCCCCCGCCAACTGGTGGGTGACGGAGAGCTCTTCGTCCTGAAGGTCGTCGGAGACTCGATGACCGAGGC
CGCGATCGTCGACGGCGACTGGGTCACGGTGCGCCGCCAGCCGGTCGCCGAGAACGGCGACATCGTGGCCGCGATGCTGG
ACGGCGAAGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTCCTCCCGCACAACTCCGCGTACCAGCCG
ATCCCCGGCGACGAGGCGACGATCCTCGGCAAGGTGGTGGCGGTCCTCCGCCGCGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(51-114)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.024

81.467

0.367