Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OHN74_RS31445 Genome accession   NZ_CP107903
Coordinates   7083563..7084759 (+) Length   398 a.a.
NCBI ID   WP_327697935.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00459     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 7078563..7089759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN74_RS31435 (OHN74_31430) - 7080917..7082335 (+) 1419 WP_327697933.1 sugar porter family MFS transporter -
  OHN74_RS31440 (OHN74_31435) - 7082457..7083428 (-) 972 WP_327697934.1 LLM class flavin-dependent oxidoreductase -
  OHN74_RS31445 (OHN74_31440) pilA 7083563..7084759 (+) 1197 WP_327697935.1 signal recognition particle-docking protein FtsY Machinery gene
  OHN74_RS31450 (OHN74_31445) - 7084875..7085537 (-) 663 WP_327697936.1 bifunctional DNA primase/polymerase -
  OHN74_RS31455 (OHN74_31450) - 7085995..7087479 (+) 1485 WP_327697937.1 hypothetical protein -
  OHN74_RS31460 (OHN74_31455) - 7087789..7089129 (+) 1341 WP_327697938.1 ammonium transporter -
  OHN74_RS31465 (OHN74_31460) - 7089126..7089464 (+) 339 WP_006379495.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 41882.98 Da        Isoelectric Point: 4.5046

>NTDB_id=648531 OHN74_RS31445 WP_327697935.1 7083563..7084759(+) (pilA) [Streptomyces sp. NBC_00459]
METIILAVVIAVVVLGVLGGLVVGSRRKKPLPPAPPTTPDLTAPPAEPHVGDEAETPRDEPRRTIEEVDLPGADGSSVAV
EEPPVPVIEVPEPTAGRLVRLRARLSRSQNALGKGLLTLLAREHLDDDTWEEVEDTLLTADVGVQPTQDLVARLRERVKV
LGTRTPADLRGLLREELLQILEPGFDRTVKTDSNLDTPGIVMVVGVNGTGKTTTTGKLARVLVADGKNVVLGAADTFRAA
AADQLQTWGDRVGARTVRGPEGGDPASIAFDAVKEGIEAGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHAPLDEVLL
VLDATTGQNGLVQARVFAEVVEITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGADDLAPFDPEAFVDALIGE

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=648531 OHN74_RS31445 WP_327697935.1 7083563..7084759(+) (pilA) [Streptomyces sp. NBC_00459]
ATGGAAACCATCATCCTTGCTGTAGTCATCGCCGTGGTCGTGCTCGGTGTGCTCGGTGGGCTCGTCGTCGGCAGCCGCAG
GAAGAAGCCGCTGCCCCCGGCGCCCCCCACGACACCCGACCTCACCGCCCCTCCGGCCGAGCCGCACGTCGGCGACGAGG
CCGAGACGCCGCGCGACGAACCGCGCCGCACGATAGAGGAGGTGGATCTCCCGGGCGCGGACGGCTCGTCCGTCGCCGTC
GAGGAACCTCCCGTCCCGGTCATCGAGGTGCCGGAGCCCACCGCCGGGCGGCTGGTCCGGCTGCGTGCCAGGCTCTCCCG
GTCGCAGAACGCGCTCGGCAAGGGGCTGCTCACGCTCCTCGCGCGCGAGCACCTCGACGACGACACCTGGGAGGAGGTGG
AGGACACCCTCCTCACCGCCGACGTAGGCGTCCAGCCCACCCAGGATCTGGTCGCGCGGCTGCGCGAGCGCGTGAAGGTG
CTCGGCACCCGCACTCCCGCCGACCTGCGAGGGCTGCTGCGCGAGGAGCTGCTCCAGATCCTCGAACCCGGGTTCGACCG
GACCGTGAAGACCGACTCGAACCTCGACACCCCGGGCATCGTGATGGTCGTCGGCGTCAACGGCACCGGCAAGACCACGA
CCACCGGCAAGCTCGCTCGGGTGCTCGTCGCCGACGGGAAGAACGTCGTTCTCGGTGCCGCGGACACCTTCCGGGCCGCC
GCCGCGGACCAGCTCCAGACCTGGGGCGACCGTGTCGGAGCCCGTACCGTGCGCGGTCCCGAGGGCGGTGACCCCGCGTC
GATCGCCTTCGACGCCGTCAAGGAGGGCATCGAGGCCGGTGCCGACGTCGTACTGATCGACACGGCCGGGCGGCTGCACA
CCAAGACCGGGCTCATGGACGAGCTCGGCAAGGTCAAGCGCGTCGTCGAGAAGCACGCCCCGCTGGACGAGGTGCTGCTC
GTGCTGGACGCCACGACCGGGCAGAACGGGCTCGTCCAGGCCCGCGTCTTCGCCGAGGTCGTCGAGATCACCGGCATCGT
GCTCACCAAGCTCGACGGCACCGCCAAGGGCGGCATCGTCATCGCCGTACAGCGTGAGCTGGGTGTGCCGGTGAAGCTGA
TCGGGCTCGGCGAGGGGGCCGACGATCTGGCTCCGTTCGACCCGGAGGCGTTCGTTGACGCTCTTATCGGAGAGTGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(112-177)

SRP54-type protein, GTPase domain (SRP54)

(200-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.787

87.186

0.364